Hibiscus syriacus (Rose-of-Sharon): 120154038
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Entry
120154038 CDS
T09559
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120154038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120154038
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120154038
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120154038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DUF4407
Motif
Other DBs
NCBI-GeneID:
120154038
NCBI-ProteinID:
XP_039021824
LinkDB
All DBs
Position
Unknown
AA seq
883 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRE
QIKTWIQSSEIKDKKISASYEQALVDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELESQIDSFEAEIEGLSVKKGKTRPPRLTHLETSITRHND
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSSLPLYKVEA
LEDLVAIGPLSKGAPILKISLATPTSQMPGSSSLEHVEDTASQDSNSDMAKIPPSKFSAV
NSSAAATPTGSHATPALNLPPQSLSGASVLPDSISAQSVLESTASTNPFSPVNLSSSTKE
EDITNFPGRRPSPSLADTGVRGISRGGLSGQLSSSTPLVSGSVASGNVGLGVVPSASDMS
KRNILGVYERLGNSSMGQSLASPISNRMLLPQAAKAKDGSSSTDSGNPIEFAGLSSRAFS
PSMVSGIQQRPGSSFQNQNELGQFRGRTEIAPDIREKFLQRFQQVQQQGHSNLLGNMPPL
AGGNHNQFSAQQQSPLMQQLNSQSSSFSIQSGVGLGGQTPGLNSVISPGLQQQPTSIHQQ
SSQQALVTNISKDADVGIAKVEEQQLQNLSDGSSSEAIPTSGLAKNLMNEDDSKAPYAID
SPAAVSGPLTEPARNIRDIDLSPGQPLQYNQSSSGLGVIGRRSVSDLGAISDNLGGSTNS
GGMHDQLYNLQMLETAYYKLPQPKDSERAGNYIPKHPTATPASYPQVQAPIVNNPAFWEC
LSIDGYDTGTDTLFFAFYHQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKIAMDE
FEQGTYVYFDFHIANDDHQHGWCQRIKTEFIFEYNFLEDELMV
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgggagctagtcgcaagctacaaggagagatcgatcgtgttctcaagaaagtccaggaa
ggtgtcgatgtgtttgatagcatctggaacaaggtttatgataccgataacgcaaaccag
aaggaaaaatttgaggctgacttgaagaaggaaatcaagaagctgcaaaggtatagggag
cagatcaagacatggattcaatcgagcgagatcaaggataagaaaattagtgcctcttat
gagcaggcattggtggatgctcggaagcaaattgaacgagaaatggaaaggtttaagata
tgtgagaaggagactaagacaaaagcattctctaaagaaggcttgggccaacaacctaaa
actgatccgaaggagaaggctaagtcagagacaagggattggctgaacaatgtggtttca
gagttagaatcccagattgatagttttgaagctgagattgaggggctgtctgtgaagaaa
ggaaagacaagacctcctagactgacacacttggagacatcaattacacgacacaatgat
catataatgaagttagaattgattttaagactattggacaatgatgaattgagtccagag
caagttaatgatgtgaaagacttcttggatgattatgtggaacgtaatcaggacgacttt
gatgaatttagtgatgttgatgagctctacagctcattacctctatacaaggtggaggct
cttgaagatctggttgcaattggtccactttccaagggtgctccaatcttgaagatttct
ttggcaacaccaacatctcaaatgcctggtagttcttccctggagcatgttgaagatact
gcttcccaggatagtaattctgatatggcaaagattccaccttcaaaatttagtgcagtt
aattcttctgctgcagcaacaccaactggtagccatgcaacccctgcactgaatcttcca
cctcagagtctgtctggtgcttcagttcttccagattcaatttctgctcaaagtgtcttg
gaaagcactgcctctaccaatcctttttctcctgtaaatttgtctagttctacaaaggaa
gaagatatcacaaacttcccaggacgtaggccgtctccatcccttgccgatactggagta
cgaggcattagtagaggaggtctatccggtcagctttcatctagtaccccccttgtgtct
ggaagtgtggcttctggcaatgtaggccttggtgttgtcccttcagcgtctgacatgtcc
aaaagaaatattttgggggtttatgagagacttggaaatagtagcatggggcaatctctg
gcatcacctattagtaacagaatgctcttgcctcaagcagccaaggctaaggatggaagt
tcatctactgattctggtaatcctattgagtttgctggattatctagcagagctttttcc
ccttcaatggtttcgggcatacagcagaggcctggaagttcttttcagaatcaaaatgag
ttggggcagtttcgtggaagaactgagatagctcctgatataagggaaaagtttttgcaa
cggttccagcaagtgcagcaacaaggtcatagcaacctgcttggcaacatgcctcctctt
gctggaggaaatcataatcaattttctgcacaacaacaaagccctctcatgcagcagctc
aattctcaaagctcatcattctctatccaatccggtgtgggactcggtggccaaacacct
ggtcttaatagtgttatttctcccggcttacagcagcaaccaacctccatccaccagcag
tccagtcagcaggcattggtgacgaatatttcaaaggatgctgatgttggcatagcaaaa
gttgaggaacaacaattgcagaatttatctgatggttcaagttctgaagctattccaact
tctgggcttgccaaaaatctcatgaatgaagatgattcgaaagctccatatgcaattgat
tctcctgctgctgtatcaggccctttgacagaacctgctcgaaacattcgggatattgat
ctttctcctggacaacccttacaatacaaccaatcttctagtggtctcggagttattggt
cggagaagtgtttctgatcttggtgccattagtgacaacctcggtggttcaacaaattct
gggggaatgcatgatcaattatacaatttgcagatgctcgagactgcatattacaaactt
ccccaacctaaagactcagaacgagcggggaactacattccaaagcaccctacggcaacc
cctgctagctaccctcaagttcaggcacccatcgtgaacaatcctgccttctgggaatgc
ttgagcattgatggatacgacactggcactgatacactgttctttgcattttatcatcaa
cagaacacttaccaacaatatctagcagcaaaggagctgaagaagcaatcatggagatac
catagaaaatacaacacatggtttcagcggcatgaggagccaaaaatcgctatggatgaa
tttgaacagggaacctatgtatactttgatttccacatagcaaatgatgaccaccaacat
ggatggtgtcaaagaatcaagactgaattcatctttgagtacaactttcttgaagatgaa
cttatggtataa
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