Hibiscus syriacus (Rose-of-Sharon): 120154940
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Entry
120154940 CDS
T09559
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120154940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120154940
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120154940
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120154940
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120154940
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
120154940
NCBI-ProteinID:
XP_039022483
LinkDB
All DBs
Position
Unknown
AA seq
1007 aa
AA seq
DB search
MENPRRSFDRSRGPGFKKPRLNEGLALNPNARPFPQRTNPAGSASALRFQPNDSDTDDVS
PGGGAYEPQPVSHHQQQQQHQELVSQYKTALAELTFNSKPIITNLTIIAGENVHAAKAIT
ATVCANILEVLSDQKLPSLYLLDSIVKNIGRDYIKHFASRLPEVFCKAYRQVNPPVRQSM
QHLFGTWKGVFPPPTLQVIEKELGFAPMINGSSSGTTTSRSDPLSQRPPHSIHVNPKYLE
RQRLQQPSRAKGMVNDTIGTLANSKEDYERPDIAAITAGRPYRDPLVKMNANGVGVGRAS
VTEAISSQRNGFNVKHGSQNYPASKSGNADPRLLARQNISGRSSNATLSSWKNSEEEEFM
WEMHSRLSQHDAVNISNNSRKDHWILDASEKLDLERQFCKAQSIHDVGSRLNRETSSDSL
FTEQKEKTSYGRQISSAQPLRELHKTDGLPAFSSSHSESYSATIGGLPSATSSSLARIEK
QTQTGSSHLEQQHFQSVGTASPPEQSPLRQHSPSPSFPSRHTHQQLQNFVEPQTHSLPPS
DPNLSKFSGKLDVGSLKHSHQVSAALTSRSSYPYSLSQPPKPDHMQVESSGQTQKSLLSQ
SSKVGASSIFGNVSKTNPLAIGTLKSSTSSLLAAVMKSGILSNNSLIGSLPNKIPQDLEQ
VPSQHSLPSGSLPACFTSSGSASHDPIATTTNSSQGKVEQLPPSSVVNNAPLQTSDPESK
ASIPVSNLLSSLVAKGLISASKGALSVPSLQIPTQMQKSPEREGPSESLNKSLEISASSP
SPASSVPTSCDAPHSSTMDKISFAKPATKASVASHQSSSVEVENPIGLEFRPDVIREFHS
SVISGLLDNLPYCCSLCGLRLKLHERLNRHLEWHTMKKAELKGSDIALRGWYARSDDWIA
GKPVQLVSESTKPVNQSEMKADKEEVMVHADEDQYACMFCGEIFEDFFSQERGEWMFKGA
VYLTIPSEEDGQGGNTYERAAKGPIVHANCMSESSVHELVIKMEKGE
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atggagaatccgcgtaggtcgtttgatagatcaagaggaccgggttttaaaaaaccgcgt
ttaaacgaaggcctcgctctgaaccctaacgcccggccttttcctcaacggaccaacccg
gctggttcggcatctgctttaagattccagcccaatgattccgacacggatgacgtgagt
cctggcggtggagcttacgagccacaaccagtgtcacatcaccagcaacagcagcaacat
caggagttagttagccagtacaagacagcgttagcagagctgacttttaactcgaagccg
attataactaacttgacaatcatagccggcgagaatgtccatgctgccaaggcgattact
gctaccgtttgcgccaacattcttgaggttctcagtgaccaaaagctgccatcgctctat
cttttggatagtattgtaaagaatattgggagagattacattaaacattttgcttccaga
ttgccagaggtgttctgcaaagcatataggcaagttaatcctcctgtgcgtcagagtatg
cagcatctttttggaacatggaaaggggtgttccctcctccaaccctccaggtgattgag
aaggaacttggctttgctcccatgataaatggttcatcttcaggaacgacaacatcaaga
tccgatccactttcacagcgtccaccacatagcattcatgtaaatccaaagtatctagaa
aggcagcgacttcaacagcctagcagggcaaaaggtatggtcaatgatacgattgggact
ttggccaactcaaaggaggattatgagaggccagatatagcagccattacggctggacgg
ccatatagagatcctttggttaaaatgaatgctaatggtgtgggtgttggaagagccagt
gttactgaggctatttccagccagaggaatggtttcaatgttaaacatggatctcaaaat
tacccggcatccaaatctgggaatgctgatcctcgtttattggcaagacaaaacatttct
ggtagaagcagtaatgcaacgctcagcagctggaaaaattctgaggaagaagaatttatg
tgggagatgcactctagattgtctcagcatgatgcagtcaacatctctaataactcgagg
aaagatcattggattcttgatgcttctgaaaagttggatttggaaagacagttctgcaaa
gcacaaagtattcatgatgttgggtccaggttgaacagagaaacatcttccgattcattg
ttcaccgagcagaaggaaaaaacttcttatgggcgccagatttcatctgcacagccattg
cgggagttgcataaaacagatggattgcctgcttttagttccagccattctgaaagctat
tctgccactattggtgggttgccttctgctacaagttcttctctggccaggattgaaaag
caaacccaaacaggttcatctcatttagaacaacagcattttcagtccgtgggaactgca
tcaccacctgaacagtctcctttgcgccagcattccccttcaccttcatttccttcacgc
catacccatcaacagttgcagaattttgttgagccacaaactcattccctacctccctct
gatcccaacttatctaagttttcagggaagttggatgttggatctcttaaacactctcat
caggtttctgctgctttgacttctcgatctagctacccttattctctttcacaaccacca
aaaccagaccatatgcaggttgagtcttctggtcaaactcagaagtcgcttctgtcccag
tcctccaaagtaggagcatcctcgatatttggaaatgtatcaaagaccaatccacttgct
attggaactttaaaatcgagtacaagtagtctattggctgctgtaatgaagagtggcatc
ctctccaataattcccttattggtagccttccaaataagattcctcaagatttggagcaa
gtgccatcacagcattctcttccaagcgggtctctgcctgcttgtttcacttcatctggt
tctgcgtcccacgacccaatagcaactactacaaatagttcgcagggaaaagtagaacaa
ctaccaccttcatctgttgttaataatgccccactgcaaacttcagatcctgaaagcaag
gcttcaatccctgtatccaatcttttgagctcattagtagcaaaaggtttaatatctgcg
tcaaagggtgccttgtctgttccatctcttcaaattcctactcaaatgcagaagagcccg
gaaagggaggggccatctgaatcactgaacaagagcttggaaatttctgccagtagccct
tcaccagcttcttccgttcctacttcatgtgatgctccacactcctccaccatggacaag
atctcatttgccaaacctgctacaaaagcttcagttgcctcgcatcagtcttcctcagta
gaagtagaaaaccccataggactggaattcagaccggatgtaatcagagaatttcattca
tctgtgatcagtggactgttggataaccttccttactgttgcagcttatgtggtcttcga
cttaagcttcatgaacggctcaatagacacttagagtggcacaccatgaaaaaggctgag
ttaaaaggctctgatatagcacttaggggatggtatgcacggtcagatgattggattgct
ggaaagccagtgcaattagtatctgaatccactaaaccagtgaaccagtctgaaatgaaa
gcagataaggaggaggttatggttcatgcagatgaagatcaatatgcatgcatgttttgt
ggtgagatattcgaagatttctttagccaggagaggggtgaatggatgttcaagggagca
gtatacttgactatcccatcagaggaggatggtcagggtggaaatacatatgagagggca
gccaagggtcccattgtgcatgcaaattgtatgtcagagagttcagttcatgagttggtt
attaaaatggaaaaaggagagtaa
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