Hibiscus syriacus (Rose-of-Sharon): 120155857
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Entry
120155857 CDS
T09559
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120155857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120155857
03009 Ribosome biogenesis [BR:
hsyr03009
]
120155857
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120155857
Spliceosome [BR:
hsyr03041
]
Complex A
U1 snRNP components
U1 related factors
120155857
Complex B
120155857
Ribosome biogenesis [BR:
hsyr03009
]
Eukaryotic type
Pre-60S particles
Helicases
120155857
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Motif
Other DBs
NCBI-GeneID:
120155857
NCBI-ProteinID:
XP_039023250
LinkDB
All DBs
Position
Unknown
AA seq
1162 aa
AA seq
DB search
MTSAEAGAATLGPRYAPDDPTLPKPWKGLIDGSTGLMYYWNPETNVTQYERPTVMPPPLP
LGPPPPVSTPKLAPIPAAYSAQPNGAAAQMGHILVPQGAKQQGQQMSQLTQQGLIMGQQP
GSMAAQVSDQHGSQQPGPQMGQHGQFIAQQNRPQTMQHPNQQMMNQIGQQTVQHQNSQMG
QPQGHQYAHQHLQYMGYQQSVLPQGQQSSQQLAPHGAQSQGQQYLNQEDYKAAGPKKEDV
DFQLGNQTGFSPAQFQHMGTSSQNQSAGTNSVPMPQPGYNLGQAEQFTGSSINMPPPTSI
GQSQQTGTDLVKRQQGHRFQNQMGPSMIQTSMPPPALNTGYEDKLHGRSGNDYYFNSGKD
GPMMGPRLPSLSAIPIETRPSGLPPQNAIPGHGGGFNPIGGHGVHNMYGHTGPPFPNNSL
TIPPFVPAVDTNNMSPAEAYRKEHEVTATGDNVPGPFIRFEDTGFPPEILREIHSAGFST
PTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFMLLRQRRNNPLKGPTVLVLAPTR
ELATQIQEEVIKFGRSSRVSCTCLYGGAPKANQLKELDRGADIVVATPGRLNDILEMKKI
EFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAADLLVNP
VQVNIGSVDELAANKSITQYVEVVPQMEKERRLGQILQAQERGSKVIIFCSTKRLCDQLT
RSLGRNFGAVAFHGDKSQTERDWVLSQFRSGKSPILVATDVAARGLDIKDIRVVINFDFP
TGIEDYVHRIGRTGRAGATGVSFTFFSEQDWKYAPDLIQVLERANQHVPPEVREIASRGG
PGFGKDQGGINRFNSGGSGGRWDNGGRGGMRDGGFGGRGGMRDGGFGGRGGIRDGGFGGR
GSIRDGSFGGPGGRGDPFSGRGNRGRGFGGPAGGQGGWGRNERSLHDQNNSFDGRGRGRG
RGRGRFDNRRGTADRSGGRSYSRSPDMVRTWRHSRSRSRSRSWSRSRSRSRSRSWSRGRS
RSYSRSPRRSYSRSPSRGRSHSRGRRSRSRSRTYDRYDEHNAERKVAKRAFDSPPASDEQ
NLEQKDVAKRAFDSPPHEQNTEQKDVAKQAFVSPPVSSMSPGRQGTLVFENNSVQPSQTA
DSAELPRGEVGAGQVHQSMTEP
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtgcagaagctggggcagccactcttggcccacgatatgcgcctgatgatcct
actcttccgaagccttggaaggggctgattgatggaagcactggccttatgtattactgg
aatcctgagactaatgttacccagtatgagaggcctactgttatgcctccacccttgcca
ctgggccctcctcctccagtttccacacctaagctagctccaatcccggctgcttactca
gcacaacctaatggtgcggccgcacagatgggccacatactagttccccagggtgcaaaa
cagcaggggcagcaaatgagccaattaactcaacagggactaataatggggcagcagccg
ggttcaatggcagctcaggtttctgaccagcatggctcacaacaaccaggccctcaaatg
ggacagcatgggcagtttattgcacagcagaatagaccacaaacaatgcagcatccaaat
cagcaaatgatgaatcaaataggacagcagacggtgcaacaccaaaactcacaaatggga
caacctcaagggcatcaatatgcacatcagcatttgcagtatatgggatatcaacaaagt
gtgcttccacaggggcaacaaagttctcagcagctggctcctcatggtgctcaatcccag
ggtcagcagtatctaaatcaagaagattataaagcagcaggtcccaaaaaagaagatgtt
gattttcagttagggaaccaaactggattttctcctgctcaatttcaacacatgggcaca
tcttctcagaatcagtctgctggaactaattcagttccgatgccacagccaggttataat
ttgggtcaagcagaacagtttactggctcctccatcaatatgcctccgccgacctctatt
ggtcagtcacagcaaactggaacagatttggttaagcggcagcagggtcataggtttcag
aatcagatgggcccatccatgatacagactagtatgcctcctcctgccttaaacactggc
tatgaagataaactacatggcagatctggaaatgattactacttcaatagtggcaaagat
gggccaatgatgggtccacggctgccctcactttcagctatacccatagagacaaggccg
agtggtctgccacctcaaaatgccatacctggtcatggtgggggattcaatcctatcgga
ggtcatggagtgcataacatgtatggtcatactggtccaccttttccaaataattccttg
acgattcccccatttgttccagccgtggatactaataatatgtctccagctgaagcatac
cgcaaagaacatgaagtcacggcaacgggagacaatgttccgggaccattcattaggttt
gaagatactggttttcctccagagatactgagagagattcattctgctgggttttcaacc
cccaccccaatacaagcacagacatggcccattgcactacaaagtcgggacattgtggca
attgccaaaactggttccggtaaaacattgggctacttgattcccgctttcatgcttttg
aggcagcggcgcaacaaccctctgaagggtccaacagtgttggttttggctccaacccgc
gagctcgctacacaaatacaagaagaggtcatcaaatttggccgatcttcaagagtctct
tgcacgtgtttgtatggtggagctccaaaggctaatcagttgaaagagttagatcgagga
gctgatattgttgtggcaactcctggtcgactgaatgacatccttgaaatgaaaaaaatt
gagtttgggcaggtgtcactccttgttcttgatgaagcagatcgaatgcttgacatgggt
tttgagccccagatccgcaaaattgttaatgagatacctcctcgcagacaaaccctgatg
tacacagcaacgtggcccaaagaagttagaaaaatagcagctgaccttcttgtcaatcct
gtccaggtgaacattggcagtgttgatgagcttgctgccaataagtctatcacccagtat
gttgaggttgtcccccagatggaaaaagagaggcgcctggggcagattctccaagctcaa
gaacgtggttcaaaggttattattttttgctccactaagagattgtgtgaccagctcact
cgcagtcttggacgcaactttggagctgttgcattccatggggataaatctcagactgaa
agggactgggtcttgagtcagttccgaagtgggaaatccccgatattagttgccactgat
gttgctgcccgtgggcttgacatcaaagatataagggtggttatcaattttgatttccct
actggcattgaggattatgttcaccgaattggaagaaccggaagagctggtgcaactgga
gtgtctttcacctttttctcggagcaggactggaagtatgctcctgacttgattcaagtt
ctggagagggcaaaccagcatgtgcctcctgaggtgcgagagatagcttctcgtggtggg
cctggttttgggaaggatcaaggtggaattaatagatttaattctggtggtagtggtggg
cgctgggacaatggaggccgtggtggaatgagggatggtggctttggtggacgtggtgga
atgagggatggtggctttggcggacgcggcggtataagggatggtggttttggtgggcgc
ggcagtattagggatggtagttttggtggccctggcggtagaggtgacccattttctgga
cgtggaaacagaggacgcggatttggtggtcctgctggtggtcaaggaggttggggcagg
aatgaaagaagcttgcatgatcaaaataatagttttgatgggagaggacgtggtcgtggt
cggggacggggacggtttgataacagaagaggcactgctgataggagtggaggcaggagc
tatagccgaagtcctgacatggttcggacatggcgccatagccgtagtcgcagccgcagt
cgtagttggagtaggagccgaagcagaagtagaagcaggagctggtcacgtggccgtagc
cgcagctacagccgtagccctcgccgaagctacagccgtagtcctagtcgaggcagaagc
catagccgtggtcgccgcagtcgaagccgtagcagaacctatgacagatatgacgaacat
aacgccgagcggaaggttgcaaagcgggcatttgactctcctcctgcctctgacgaacag
aacttagagcagaaagatgttgcaaagcgtgcatttgattctcctccccacgaacagaac
actgagcagaaggatgttgcaaagcaggcattcgtttctcctcctgtttccagcatgtct
cctggcagacaaggcactttagtgtttgaaaataattctgtacaaccatcacaaacggct
gatagtgctgagctgcctcgaggagaagtgggtgcaggccaagtgcatcagtcgatgacc
gagccctaa
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integrated database retrieval system
