Hibiscus syriacus (Rose-of-Sharon): 120156253
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Entry
120156253 CDS
T09559
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120156253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120156253
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120156253
Spliceosome [BR:
hsyr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120156253
Complex C
U5 SnRNP specific factors
120156253
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
Motif
Other DBs
NCBI-GeneID:
120156253
NCBI-ProteinID:
XP_039023572
LinkDB
All DBs
Position
Unknown
AA seq
2175 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRVY
KGRPPELDEKLKKSKKKKERDPLAEPVPVRQSKRRKLREESVLTVTEEGVYQPKTKETRA
AYEAMLSLIQQQLGGQPLNIVSGAADEILAVLKNEGIKNPDKKKEIEKLLNPIPGQVFDQ
LVSIGKLITDYQDGGDGAGGSAVNGDEGLDDDVGVAVEFEENEDEEEESDLDMVQDDDDD
DEDGVDNGSGAMQMGGGIDDDDNHETNEGMNLNVQDIDAYWLQRKISHAYDQQIDPQQCQ
KLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKYLLRNRLKVVWCTRLTRAEDQEERK
KIEEEMMSLGPDLAAILEQLHATRATAKERQKILEKNIREEARRLKDDSGGDGDRERRGL
ADRDADGGWLKGQRQLLDLDSLAFDQGGLLMANKKCDLPVGSYRHHSKGYEEVHVPALKA
KPLESNERLVKISEMPDWAQPAFKGMQQLNRVQSSVYETALFSADNILLCAPTGAGKTNV
AVLTILQQLALNMDSDGSISHNNYKIVYVAPMKALVAEVVGNLSHRLEAYGVTVRELSGD
QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQMVKLLIIDEIHLLHDNRGPVLESIV
ARTVRQIETTKEHIRLVGLSATLPNFEDVALFLRVNLEKGLFHFDNSYRPVPLSQQYIGI
TVKKPLQRFQLMNDICYEKVMAVAGKHQVLIFVHSRKETAKTARAVRDTALANDTLSRFL
KEDAASREILQSHTDMVKSNDLKDLLPYGFAIHHAGLARTDRQIVEELFADGHVQVLVST
ATLAWGVNLPAHTVIIKGTQIYSPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIITG
HSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIGYTYLYIRMLRN
PTLYGLPADVLSQDLTLEERRADLIHSAAVILDKNNLVKYDRKSGYFQVTDLGRIASYYY
ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKESL
EEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLIRALFEIVLKRGWAQLAEKAL
NLCKMVTKRMWNVQTPLRQFNGIPNEILMKLEKKDLAWDRYYDLSSQEIGELIRFPKMGR
TLHRFIHQFPKLNLAAHVQPITRTVLRVELIITPDFQWEDKVHGYVEPFWVIIEDNDGEY
ILHHEYFLLKKQYVDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPISFRHLILP
EKYPPPTELLDLQPLPVTALRNPSYEALYKDFKHFNPVQTQVFTVLYNTDDNVLVAAPTG
SGKTICAEFAILRNHQKGPDSTMRVVYIAPLEAIAKERYRDWERKFGKGLGMRVVELTGE
LAMDLKLLEKGQVIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQGGTVLEVIV
SRMRYIASQVEKKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD
IANFEARMQAMTKPTYTAIVQHAKGGKPAIVFVPTRKHVRLTAVDLMSYSRVDNEEEPAF
RLRSADELKPFVDKISEETLRATLEHGVGYLHEGLSSLDQEVVSQLFEAGWIQACVMSSA
LCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP
RKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVATVIENKQDAVDYLTWTFMYRRLTQNPN
YYNLQGVSHRHLSDHLSELVENTLNDLEASKCITIEDDMDLSPLNLGMIASYYYISYTTI
ERFSSSLTSKTKMKGLLEILASASEYANLPIRPGEEEVLRRLINHQRFSFENPRFTDPHV
KANALLQAHFSRQLVGGNLSLDQREVLLYATRLLQAMVDVISSNGWLSLALLAMEVSQMV
TQGMWERDSMLLQLPHFTKERAKRCQENPGKNIETIFDLVEMEDDERHELLQMSDLQLLD
IAKFCNRFPNIDLSYDVLDSENVRAREYVTLQVTLERDLEGKTEVGPVDSPRYPKAKDEG
WWLVVGDTKSDQLLAIKRVSLQRKAKVKLEFAAPTEAAEKTYTLYFMCDSYLGCDQEYNF
NVDVKEAAGPDEDSG
NT seq
6528 nt
NT seq
+upstream
nt +downstream
nt
atggcccatctcggaggcggtgccgaggcacacgctcgtttcaagcagtatgaatatagg
gcgaattctagtttagttcttacaactgattctcggcctcgtgatactcatgagccgaca
ggggagccggaatctctctggggaaaaattgaccctaggtcatttggtgaccgtgtttat
aaaggtaggccgccggagctggatgagaaacttaagaagtctaagaagaagaaggagcgt
gatccgcttgcggagccagttccagttaggcagagtaagaggcgtaagttacgtgaggag
agtgttttgactgttacggaggaaggggtttatcagcccaaaacgaaggagactcgggct
gcttacgaagctatgttgagtttgattcagcagcagttgggtggacagccgcttaatatt
gttagcggtgcggctgatgagattctggctgtgcttaagaacgaggggattaagaatccg
gataagaagaaggagattgagaagttgttgaatccgatcccgggccaggtttttgatcaa
cttgtttcgattgggaagttgattacggattatcaagatggtggtgatggagctgggggt
tcagctgtgaacggggatgaaggtcttgatgatgatgtgggggtggcggttgagtttgaa
gaaaatgaagatgaggaagaggaaagtgatcttgatatggtgcaggatgatgatgatgat
gatgaggatggggtggacaatggctccggggcgatgcagatgggtggtggaattgatgat
gatgataatcatgagactaatgaggggatgaatctaaatgtccaggacattgatgcttat
tggcttcagaggaagatctcccatgcttatgatcaacaaattgatccacaacagtgtcaa
aagcttgctgaagaggtgctcaagattcttgccgaaggtgatgacagggaggttgagacc
aagctattggtgcatctccagttcgataagttcagccttatcaaatatcttctgcggaac
cggcttaaggttgtatggtgcactcgcttgactagggctgaagaccaagaagagaggaag
aaaattgaggaggaaatgatgagcttgggtccggatttggcagcaattcttgagcagttg
catgccactagggcaactgcaaaagagaggcagaagattttggagaagaatattagagaa
gaggctcgtcgattaaaggatgatagtggcggagatggggatagggagaggagaggtctt
gctgatagagatgctgatggtggttggctgaagggtcagcgccagttgcttgatcttgac
agtcttgcttttgatcagggtggtcttttgatggcgaataaaaaatgtgatcttcctgtg
ggttcttacaggcatcatagtaagggttatgaggaagtccacgttccagcactgaaggca
aaaccattggaatcgaatgagaggctggtaaagatatctgagatgccagactgggcccaa
ccagcgttcaaagggatgcaacagttgaacagggttcagagcagtgtgtatgaaactgcc
cttttttccgctgataacatcctactctgtgctcctactggggctgggaaaactaatgtt
gctgtactcaccatactgcaacaacttgccttgaatatggattctgatggttcaattagc
cacaacaactacaagattgtgtatgtggcacccatgaaagctttagttgctgaagttgtt
ggtaatctttctcatcgtttagaggcatatggtgtgactgtgcgggagcttagtggagat
cagacactgactcgccaacaaattgaggagactcagattattgtgacaactccagagaaa
tgggatattattactaggaagtctggagatcggacatacacacagatggtgaaacttctt
attatcgatgagattcatcttcttcatgataatagaggacctgttcttgaaagtattgtt
gccaggactgttaggcaaattgaaaccacaaaagagcatatccggttggtcgggctgtca
gctacacttccaaactttgaagatgtagcattatttttgcgggttaatcttgaaaaagga
ctctttcattttgacaatagctacagacctgtccccctttctcaacagtatattggaatc
actgtgaagaagccattgcagagattccagttgatgaatgatatttgttatgaaaaggta
atggcagtggctgggaagcatcaagtccttatttttgttcattcaaggaaggaaactgct
aaaacagctcgtgcagtgcgagacactgcacttgctaatgatacacttagtagattcttg
aaagaggatgctgctagtcgtgagattctccagagtcacacagatatggttaaaagcaat
gatctcaaggatctactgccttatggttttgcgattcatcatgctgggttggcaaggact
gatcgtcaaattgttgaagaactctttgcagatggacatgtacaagtgttggtatcaact
gcaacgcttgcttggggtgtgaacttgcctgctcatacagtcattattaaagggacccaa
atttacagcccagaaaaaggagcatggactgagctaagtcctctagatgtgatgcagatg
ctgggacgtgctggaaggcctcaatatgattcatatggggaaggcatcatcatcactggc
cacagtgaacttcagtactacctttcattgatgaatcaacagcttcctattgagagtcag
tttgtgtctaaactggctgatcagttgaatgcagaaatcgttcttggaactgttcagaat
gctagagaagcctgcaattggattggatatacatatttgtatattcgcatgttgaggaat
cccacactttatggattgccagctgatgttctttcacaggatttaactttggaggagagg
agggctgatttgatccattctgctgcagttatcttggacaagaataatttggtgaagtat
gatagaaaaagtggttacttccaagtgactgatttgggccgtattgctagctactactat
ataagtcatggaacaatctctacatataatgagcatttgaagccaaccatgggggatata
gagctctgcaggctgttttcactcagtgaagagttcaagtatgtgacagtcagacaagat
gagaagatggaattggctaagcttttggaccgtgttccaattccaataaaggaaagcttg
gaggagcctagtgcaaaaatcaatgttttgctgcaagcatatatctcgcagttaaagctt
gaagggctttcattgacatctgacatggtgtacataactcagagtgctggacgtcttatc
cgagccctatttgagattgtcttgaaaagaggttgggcacagttggctgagaaggcttta
aacttgtgtaaaatggttaccaagaggatgtggaatgttcagacacccttgcggcaattc
aacggcataccaaatgaaattcttatgaagttggagaagaaagatttggcctgggataga
tattatgacctgtcatcacaggaaatcggagagctgattcgtttccctaaaatgggaaga
acacttcacaggttcattcaccagtttcctaagctaaaccttgcggcccatgttcagcca
attactcgtactgtcttgagggttgaacttataataacaccagattttcaatgggaggat
aaggttcatgggtatgtggagccattttgggtgattattgaggataacgatggtgagtat
attcttcaccatgagtactttttgctgaagaaacagtatgttgatgaggaccacactttg
aacttcacagtgccgatttatgaaccattgccacctcaatatttcatacgtgttgtctca
gataaatggttgggatcacagactgttttacccatctccttcaggcatcttattctacca
gagaagtaccctccaccaactgagctattggatttacagcccctgcctgttactgcattg
agaaatccttcttatgaggctttatataaagattttaagcattttaatccagttcaaact
caagtcttcactgttctgtataatacggatgataatgttttagtggccgcaccgacaggg
agtgggaagaccatctgtgctgagtttgctatattaaggaaccatcaaaaaggaccagac
agtacaatgcgagtagtttatattgcacctcttgaagctattgcgaaggagcgatatcgt
gattgggagaggaaatttggcaagggtcttgggatgcgggtggttgagttgactggggaa
ttggcaatggatctgaagttgcttgagaaaggtcaagtgatcatcagtactcctgagaaa
tgggatgccctttctcgtcgctggaaacagaggaagtatgttcagcaggtcagtcttttc
attgttgatgaacttcacttgattggtggtcaaggtggtacagtgttagaggtgatcgtc
tccaggatgagatatattgctagtcaggttgagaagaagatccggattgtggctctttca
acttctcttgcaaatgctaaggaccttggagaatggattggagcaacatctcacggcctt
ttcaatttcccacctggagttcgtcctgtaccactagaaatacacattcaaggcgtggat
atagccaattttgaagcaaggatgcaagcgatgactaaacccacttacactgctattgtc
caacatgccaaaggagggaagccagctattgtgtttgttcctacaaggaagcatgttaga
ctcactgctgtggacctaatgagttactccagagtggataatgaagaggagcctgctttc
cggttgcgatctgctgacgaacttaagccttttgttgacaagattagcgaagaaacattg
agagccactctagaacatggagttggctacttgcatgagggtttaagcagtttggatcag
gaagttgtttcccagctctttgaagctgggtggattcaggcttgtgttatgagcagtgct
ttatgttggggagttccattatcagcacacttggtggttgtaatgggtacacagtattac
gatgggagggagaatgctcacactgattacccagttacagatttgttgcagatgatgggc
catgcaagtcgtcctcttcttgataattctggcaaatgtgtaatcctctgtcatgctcct
cgtaaagagtattacaagaagttcttgtatgaagcattccctgttgaaagccatttgcac
cattttctacatgacaacttcaatgcagaaattgttgcgacagttattgagaacaagcaa
gatgctgttgattatcttacatggactttcatgtataggaggctcactcaaaatccaaat
tactacaatctccagggagtaagtcacagacatctctctgatcacctttcagagcttgtt
gagaacacattaaatgatttggaagcaagtaaatgtattactatagaggatgacatggat
ctttctcctttgaatcttggcatgatagcctcttactattacatcagttacactaccatt
gagcgcttcagttcgtctttgacttccaaaacaaagatgaagggtcttctggagattctg
gcctcggcttctgagtatgcaaatcttcctatacgacctggggaagaagaggttcttcga
agattaattaatcaccagcggttttcctttgaaaaccccaggttcactgatccacatgtc
aaagcaaatgctctgcttcaagcccacttctctaggcagcttgtgggtgggaacctatca
ctagaccagcgagaggtgctattgtatgctactaggctgcttcaagctatggttgatgtt
atttcgagcaatggctggttgagccttgctctcctcgcaatggaggtgagccaaatggtg
acacaaggtatgtgggagcgagattcaatgcttctacagctcccacacttcactaaggaa
cgagccaagagatgccaagagaaccctggcaagaacatagaaactatttttgatttggtg
gagatggaagatgatgagaggcatgagctgttacagatgtctgacttgcagctgttggac
attgcaaagttctgcaatcgtttccccaacattgatttatcgtacgatgtgcttgacagc
gagaatgtgagggctagggaatatgtcaccttgcaggttacccttgaaagggatctagag
gggaagacagaggttggacccgttgattctcccaggtacccaaaagcaaaagacgaaggg
tggtggttggttgttggtgacaccaagagtgaccagctgcttgctataaaaagggtgtct
cttcagaggaaggcgaaggtgaagcttgaatttgccgctcccacagaagctgcagagaag
acgtacactttgtatttcatgtgtgattcttacctaggttgtgaccaggagtataacttc
aatgttgatgtcaaggaagctgccgggcctgatgaagacagtggctga
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integrated database retrieval system
