Hibiscus syriacus (Rose-of-Sharon): 120157115
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Entry
120157115 CDS
T09559
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120157115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120157115
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120157115
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120157115
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
120157115
NCBI-ProteinID:
XP_039024297
LinkDB
All DBs
Position
Unknown
AA seq
274 aa
AA seq
DB search
MSILPKGDSVHIREVWNDNLEEEFALIREIVDTYNYVAMDTEFPGVVLRPVGSFKNINDY
NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSSCIWQFNFCEFDISQDIFASDSIEL
LHQCGIDFKKNNEKGIDVMRFGELLMSSGIVLNDCVNWVTFHCGYDFGYLLKLLTCRSLP
DNQAGFFDLINMYFPILYDIKHMMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTS
CTFRKLRDNFFNGSTEKYAGVLYGFGVENGQNTN
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattttacccaaaggtgattcggttcatattcgagaagtttggaatgataatcta
gaagaagagtttgcgttgatccgtgaaattgttgacacttacaattatgtagctatggat
accgagttcccgggtgtagttctacgccccgttggatctttcaagaacatcaacgattat
aactaccaaactttgaaagataatgtggatatgttgaagttgatccagttgggtctcact
ttttcggatgagaatgggaatctgcccacctgcggaactgatagctcttgcatttggcaa
ttcaatttctgcgagttcgatataagccaagatatatttgctagtgattccatcgagctg
ttgcatcagtgtgggattgattttaagaagaacaatgaaaagggtatcgatgtgatgcgg
tttggggagcttttgatgtcgtccgggattgtgctgaatgattgtgtgaattgggtaact
tttcattgtggatatgattttgggtacttgctaaagcttttaacttgcaggagtttgcct
gataaccaagcaggattctttgatttgatcaacatgtattttcccatattgtacgatatc
aagcatatgatgaagttttgcaatagcctacatggtggtttgaacaagcttgctgagttg
ttggaagtggaaagagtcggtgtgtgtcaccaagctggctcggatagtttgctcacatca
tgcacatttaggaagttgagagataacttcttcaatggctccacagagaaatatgcaggc
gtgttgtatggttttggggttgaaaatggacagaatactaattag
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