Hibiscus syriacus (Rose-of-Sharon): 120158646
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Entry
120158646 CDS
T09559
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03030
DNA replication
hsyr03420
Nucleotide excision repair
hsyr03430
Mismatch repair
hsyr03440
Homologous recombination
hsyr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120158646
03420 Nucleotide excision repair
120158646
03430 Mismatch repair
120158646
03440 Homologous recombination
120158646
03460 Fanconi anemia pathway
120158646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsyr03000
]
120158646
03032 DNA replication proteins [BR:
hsyr03032
]
120158646
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120158646
Transcription factors [BR:
hsyr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120158646
DNA replication proteins [BR:
hsyr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120158646
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120158646
MMR (mismatch excision repair)
120158646
DSBR (double strand breaks repair)
HR (homologous recombination)
120158646
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Rhabdo_glycop_CD
RMI1_C
Motif
Other DBs
NCBI-GeneID:
120158646
NCBI-ProteinID:
XP_039025388
LinkDB
All DBs
Position
Unknown
AA seq
626 aa
AA seq
DB search
MAKAVSQDAISTILANPSPESSSDLPEIIVQVLDLKLTGNRYTFNASDGKMKLRAIFPSN
MSSEIIAGSVQSKGLVKILDYTLNDIPNKSEKYLIVTKCEVVSSALETEIKAEIKTEEPD
IVLKKPKLEHGIKNEAKTDLAGIILKPKQEVVSKSAAQIVHEQRENMPPVARMSMTRRVH
PLVSLNPYQGNWTIKVRLTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARK
FYEKFQLGKVYYISKGTLKVANKQFKTVKNDYELTLNENSVVEEASDEETFVPEAKFNFV
PIDQLGPYVNGREVVDIIGVVQSVTAVSNIKRKIDNENIPKRDMIVADETKKTVVVSLWN
ELANDVGQKLFDLADTSPVVAIKSLKVSDFQGVSLSTLGKSTVIINPDIPEAKKLRSWYD
LEGKVSSMANIGMGLSPSSRTGAISMYTDRVSLSHITSNPSLGDDKPAFFSIKAFVSLIK
PEQAMWYRACKTCNKKVTDAVGSGYWCEGCQKNDEECNLRYIMVSKISDARGEAWVSAFN
EVAENIIGCSAEELDELKSEQGDIDGYRQKLKEATWVPHLFRVSVSQNEYNNEKRQRITV
RAVAPINFAEESKFLLEDIKKMRNSH
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaggcagtgagccaagacgcgatatcaacgattttggccaatccatctcccgaa
tcttcttcagaccttcctgagatcatcgtccaagtcttggatctcaagctcaccggcaac
cgttacacgtttaatgcaagtgatgggaagatgaaactgagagcgatatttccatcaaac
atgtcatcagagatcattgcaggcagtgtccagagcaagggtctcgttaaaattcttgat
tatacactcaatgatatccccaacaaatcagagaagtacttgattgtgacaaaatgtgag
gtcgtatcttctgcacttgaaacagaaatcaaagctgaaatcaaaaccgaggaacctgac
attgttttaaagaagccaaagcttgaacatgggattaaaaatgaggctaaaaccgatttg
gctggtattattttgaagccaaagcaagaagtggtttcaaagtctgcagcacaaatagta
cacgagcagcgagaaaatatgcctccagttgcacggatgtcaatgacaagaagagtacat
cctcttgtttcattgaatccttaccaagggaattggacgattaaagtgcgtctcacaagc
aagggaaacatgcgtacctataagaatgccagaggagaaggttgtgttttcaatgtggag
ttaacagatgaagatggtacacaaattcaggccacgatgtttaatgaagctgcaaggaag
ttctatgagaagtttcaactggggaaagtctattacatttcaaaaggcacactaaaagtt
gctaacaagcagtttaagactgttaaaaatgattatgaattgactttgaatgagaattct
gtggtggaagaggcttctgatgaagaaacatttgtccctgaagctaaattcaactttgtc
cctatcgatcagttaggcccttatgttaatggacgggaggttgttgatattatcggagtt
gttcaaagtgtcactgctgtatcaaatattaaaaggaagattgacaatgagaatattcca
aagagggatatgatcgttgcagatgaaacgaagaagacagtggtggtttctttgtggaat
gagcttgcaaatgatgtaggccagaaattgtttgaccttgctgatacatctccagtagta
gcaattaaatcactcaaagttagtgattttcaaggtgtatctttgtcaacattgggaaaa
agtacagtgataattaatccagatattcctgaagcaaagaagttgagatcttggtatgat
ttggaagggaaagtgagttccatggccaacattggcatgggcttgagtccttcatccagg
actggagcaatatctatgtatactgacagggtttccctttctcatatcactagtaatcca
tccttgggtgatgataagcctgcatttttcagcataaaagcatttgttagcttgatcaag
cctgagcaggcaatgtggtaccgtgcttgcaaaacatgcaacaagaaagtaactgacgct
gttgggtcaggctattggtgtgaaggatgccagaaaaatgatgaagagtgcaatttaaga
tacataatggtgtcaaagatctctgatgcaagaggtgaagcctgggtttcggccttcaat
gaagtagcagagaacattattggatgctcagctgaggaacttgatgaactgaagtcagag
caaggagatattgatggataccgacaaaagctgaaggaagctacttgggttcctcatctc
tttcgagttagcgtgagtcaaaatgagtataacaatgagaaaaggcaaaggataacagtc
agggccgttgctccaattaactttgctgaagaatccaagtttttgcttgaagatatcaag
aagatgagaaattctcactag
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