Hibiscus syriacus (Rose-of-Sharon): 120158988
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Entry
120158988 CDS
T09559
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120158988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120158988
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120158988
mRNA degradation factors
5'-3' decay
Decapping complex
120158988
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
120158988
NCBI-ProteinID:
XP_039025626
LinkDB
All DBs
Position
Unknown
AA seq
1394 aa
AA seq
DB search
MASCGNPNPQPQSGGGESGSGGFDLNKLFKPSSSPMLQHLQNTNVVATPPSPSTNTTNLT
TSPSFPAQSSTPPPPPYLTPSSSYPPPTGPYPFHHHYLPYPPPPPQHQHPLHHNPNPQLL
NTNRPIPFQPQPSAPTTPTSGNDILMAFFGTQSQLQAPAPPPSAPPLSMNVNPSSPSSPS
PARLLSSKLPKGRHLHGTNLLYDINARLPSEVQPQLEVTPITKYASDPGLVLGRQIAVNR
NYICYGLKLGNIRILNINTALRSLLRGHTQRVTDMAFFDEDVHLLASASLDGRIFIWKIN
EGPDVEDKPQIFGKVVIAIQIVGQEESKHPRVCWHPHKQEILMVAIGNRILKIDTMKVGK
LEGFSAEEPLKCSVDKLIDGVQFVGKHDGEITELSMCQWLTTRLASASVDGTVKIWDDRK
PLPLVVLRPHDGHPVSSATFLTAPHRPDHIVLITGGPLNREVKMWASSSEEGWLLPSDGE
SWKCTQTLELRCSAESEVDNAFFNQVVALPHAGLFLLANAKKNAIYAVHIDYGPYPAATC
MNYIAEFTVTMPILSLTVTSDNLPGGESVQVYCVQTQAIQQYALELSQCLPPPLEKTDLD
KTDSNATRVFDAMNSDGSASLELSQGYKPTEMTQNSSVPLSSINLSSPENMSSGPQKSAS
SEVTSMSESALFGMENKTNAENMHTASPPLPLTPRLSRKSSGFRSPSSADHVNHSALDHS
VDHKVDTLKENKVEMPYIGDNMQKGEDIVQNHISNVPDPHTVFKHPTHLVTPSEILSNVS
SSTENAQVSQVINEGEATVEDVVKNDAERIEVDDEVIGETRFSETNETECPQGSHTSVAD
NKEKAFYSQASDLGIQMARDICAESYDVEGAQQANHMGVSVQADRLTNSGDGGDHNVNKD
SPPKVGETDTAVAVSPSPASAKGKKQKKKTSQVSILSSPSASPYNSTDSSNEPGCNSRAL
SADVIFPQLLAMQDMLEQSLSVQKEMQKQMNAIVSAPVNKEGKRLETSLGRSIEKVVKAN
TDALWARLQDQNARQEKLERDRMQQITNLVTNCINKDLPAMFEKSLKKEIAAVGPVVVRA
ISPTLEKSISSAITESFQKGVVEKAVNHLEKSVSSKLEVTLARQIQAQFQTSGKQALQDA
LRSSLETYVVPAFEMSCKSMFEQIDVTFRKGLREHTATAQQQVEKSHSSVVAALQEAINS
AASITQTLSGELAIGQRKLLAMAAAGANSNAGNPLVTQSSNGPLAHLHEMQPEAHMDPMK
ELGRMIAEKKYDEAFAAALHRSDVSIVSWLCSQVDLQGILSMKPCPLSQGVLLALFQQLA
CDINKETSRKLAWMTDVAVAIVPSDPTISMHVVPIFGQVSQIIDHLQSVSSASASESTSI
RVLKFVINSVLSCK
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgtgggaatcccaatccgcaaccacaaagcggcggaggtgaaagtggcagc
ggtgggttcgatttgaacaagctgttcaaacccagttccagccctatgctgcagcatctt
caaaacacgaacgtagtagcaactcctccaagtccaagtactaacactaccaaccttact
acatccccttcttttccggcccaatcctccacgccgcctccaccgccttacttgacgccg
tcctcctcttaccctcctcctactgggccctaccctttccaccaccactacctcccctac
cctcctcctcctcctcagcaccaacatcccttgcatcataatccgaatccgcaactgctt
aataccaatagacccattccttttcaaccccaaccctcagcacccaccactcctacttca
ggaaacgacattttaatggcctttttcggcactcaatctcagttacaagctcctgcgcct
cccccatctgctccgcctcttagtatgaatgtcaacccatcttccccttcgtctccttca
cctgcccgactgttgagtagcaaactccccaagggcaggcatctccatggaaccaatctt
ctttatgatattaatgccaggctgcccagtgaagtacagccccaacttgaggtcacaccc
attaccaagtatgcttctgatcctggccttgttctcggtcgtcagattgctgtcaatagg
aattacatttgttacggtctcaagcttgggaatatccgtatcctcaacatcaacacagcc
ctcagatccttgcttcgtgggcacactcagagagtaactgacatggctttttttgacgag
gatgtccaccttttggccagtgcaagtcttgatggccggatttttatatggaagatcaat
gaaggccctgatgttgaagataagccgcagatttttggtaaagttgttattgccattcag
attgtggggcaagaagaatcaaagcatcctcgagtttgttggcatcctcacaaacaagag
atcttgatggttgctattggaaatcgtattctgaaaattgatacaatgaaagttgggaag
cttgaagggttttcagcagaggaacctcttaagtgctctgttgataagcttatcgatgga
gttcagtttgttggtaaacatgatggtgagattacagagttgtcaatgtgccaatggttg
actacccgtctagcttcagcttctgtagatggcacggtgaaaatttgggatgaccgtaag
cccttaccacttgtagtgttgagaccacatgatggacatcctgttagctcagcaacattc
ttgactgctccacatcggcccgatcatattgttcttatcacaggaggcccactaaaccgt
gaagtgaagatgtgggcctcttcaagtgaagaaggctggttgttgccgagtgatggtgaa
tcatggaagtgtacccagacactggaattgaggtgttctgctgagtctgaggttgacaat
gcattctttaatcaagttgtggcgctgccccatgcaggcctgtttctgcttgcgaatgcg
aagaagaatgccatatatgctgtacacatagactatgggccttatcccgctgctacttgc
atgaattacatagccgaattcactgtcacaatgcctatattgagtctcactgtaacaagt
gataatttgccgggtggagaatctgtccaagtttactgtgttcaaacacaggctattcag
caatatgctttggaattgtctcagtgcttgccaccaccccttgaaaagacagacttggat
aaaacggattccaatgctactcgtgtttttgatgccatgaactctgatggttctgcttct
ctggaattgtctcagggatataaaccaaccgaaatgactcaaaattcctcagttcctttg
tcatctataaacttaagtagccctgaaaacatgtccagcggtccacaaaaatcagcttct
tcagaggtgacatccatgtctgagagtgctttgtttggtatggaaaataagacaaatgct
gaaaatatgcacactgcatcacctccacttccattaactccaaggttatcacgaaagtct
tctggtttcagaagtccatcaagtgctgatcatgttaaccactctgcacttgatcattct
gttgaccataaggtggacacgctcaaagagaataaggttgaaatgccctacataggtgat
aacatgcaaaaaggtgaagatattgtccaaaatcacatttcaaatgttcctgatcctcat
acagtgttcaaacacccaacccatctagtaacaccatctgagatattgtctaatgtatct
tcatcgacagagaatgctcaggttagtcaggttattaatgagggggaggcaacagttgaa
gatgtggtcaagaatgatgctgaaagaatagaggtagatgacgaagttattggtgagaca
agattttctgaaactaatgaaaccgaatgtccacaaggctcccatacttctgttgcagat
aacaaagaaaaggccttctactctcaggcatcggatcttggcattcagatggccagagat
atttgtgcagaaagttatgatgttgagggagctcaacaagctaatcacatgggtgtttca
gttcaagctgatagacttacgaattctggtgatgggggtgaccataatgtaaataaagat
tcccctccaaaggttggtgaaacagacactgctgtcgctgtttccccatctcctgcttct
gctaaagggaaaaagcagaaaaagaaaacttctcaagtatctatcctttcttccccttca
gcgagcccatataattccacagattcatctaatgaaccagggtgcaattccagggctctg
tcagctgatgttattttccctcaattgttggccatgcaggatatgcttgagcagtccctt
agtgtgcagaaggaaatgcagaagcagatgaacgcaattgtctctgctccggttaacaaa
gaagggaaaagactggaaacatccttgggcaggagcattgagaaagttgtaaaggcaaat
acagatgctttgtgggctcgtctccaagatcaaaatgcaagacaagagaagttagaaaga
gaccgcatgcagcagataacaaatttggtcaccaactgtattaataaggacttgccagcc
atgtttgagaaatccttaaagaaggagatagctgcagttggccctgtggtggttcgggct
attagtcccactctggagaaaagtatatcttctgccattacagagtcattccagaaagga
gttgtagagaaggcagtgaaccatttggagaagtcagtcagttcaaaacttgaagtgaca
ttggccaggcaaatccaagcacaatttcaaacttctggaaagcaagcacttcaggatgca
ctgaggtctagcttggaaacttatgttgttccagcattcgagatgtcatgcaaatccatg
tttgagcaaattgatgtcacatttcgaaaagggctaagagaacacacagctactgctcag
cagcaagttgaaaaatcacattcttctgttgtcgctgctctacaggaagctattaattct
gcagcttcaatcacacaaactttaagtggagaattggcaattgggcaacgaaaacttcta
gctatggcagctgcaggtgccaactctaatgcaggaaatcccctggtgacacaatcaagt
aatggaccattggctcatctgcacgagatgcagccggaggcacatatggatccaatgaaa
gagttgggaagaatgatagctgagaagaaatatgatgaagcattcgcagcagccctgcac
agaagtgatgtctccatagtttcctggttgtgttctcaggtcgatctgcaagggatattg
tctatgaagccatgcccgcttagccaaggagtattgctagctcttttccagcaactggct
tgtgatatcaataaggaaacaagtagaaagctggcatggatgactgatgtagccgtggct
atagtcccctcagatccaacaatttccatgcatgtcgtaccaatcttcggacaggtctct
cagattatcgatcatctacaatccgtgtcgtctgcatccgcatccgaatccaccagcatc
cgcgttcttaagtttgtcataaacagtgtgttgagctgtaaatga
DBGET
integrated database retrieval system
