KEGG   Hibiscus syriacus (Rose-of-Sharon): 120159144
Entry
120159144         CDS       T09559                                 
Name
(RefSeq) UBP1-associated protein 2C-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
hsyr  Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsyr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120159144
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsyr03019]
    120159144
   03041 Spliceosome [BR:hsyr03041]
    120159144
Messenger RNA biogenesis [BR:hsyr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120159144
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120159144
Spliceosome [BR:hsyr03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    120159144
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 120159144
NCBI-ProteinID: XP_039025726
LinkDB
Position
Unknown
AA seq 435 aa
MQFMDPIKKRKLDENGAVSAITEPDPIIKLTPQDGRKLIERFTLEQLLDILQEAVCRHVD
VLSAVRSIADQDPSQRKLFIRGLGWDTTTDGLRSHFSVYGELEEAVVILDKTTGKSKGYG
FITFKHVDGAFLALKEPSKKIDGRVTVTQLAAGGNSGMNSNPVDVHMRKIYVANVPYDMP
ADKLLGHFAQYGEIEEGPLGFDKQTGKSRGFTLFVYKTAEGAQAALVEPVKNIDGRLMNC
KLAIEGKKGKQGQDGMVQSGGAAPVNAEMGMGGPGGGYGGPGGPGGYGGFSGGLQGPPGP
MGHPHPLNSSGVGVGALSGNGVAGGGYGSGLGGPYAGYGGPGPAGYAGTGSTGYGGLSTA
GAGAGGALPAAAGGSSLYRLPNSSVGMPTGGYPEAAHYSLSSAGAFPNQLHQGAGASPAP
RVPPGAMYPSGPPFY
NT seq 1308 nt   +upstreamnt  +downstreamnt
atgcaattcatggatccgatcaaaaagcgcaagcttgatgaaaacggtgcagtttcagcc
ataacagaacctgatccaatcatcaaacttaccccacaagatggccgcaaactaatcgag
cgcttcaccctcgagcagctcctggacatccttcaagaagccgtctgtcgccacgtcgac
gttctatctgccgtccgatctatcgccgaccaggacccatctcaacggaagctcttcatc
cgtgggttgggttgggataccacaactgacggccttcgttcgcacttttctgtctatggg
gaactcgaagaagcggttgttatcctcgacaagactaccgggaaatcgaaagggtatggg
tttattacgtttaagcatgttgatggtgcttttcttgctcttaaagaacctagtaagaaa
attgacggaagggttacggtgacacagctggcggcggggggtaattcggggatgaatagt
aacccggtggatgttcatatgaggaagatttatgtagccaatgtaccgtatgatatgccg
gcggataagttattgggtcattttgctcagtatggggaaatagaagaggggcctttgggt
ttcgataagcagacggggaaatcaaggggatttactctttttgtttataagactgcagaa
ggggctcaggcagcgttagtggagccggtgaagaacattgatgggagactaatgaattgt
aagctggctattgaagggaaaaaagggaagcaaggacaagatgggatggtgcaaagtgga
ggtgcagctccggttaatgcagagatgggaatgggaggacctggtggaggatacggtggg
cctggcggaccgggtggttatggtgggttttcaggtggactgcaagggccgcccggtcca
atgggtcatcctcatcccttgaattcatcaggagttggagtgggggctttgagtggaaac
ggagttgctggtggtggttatggatctggacttggtggtccctatgctgggtacggtggt
ccaggtccagctggctatgctggaacaggttcaaccggctatggtgggttgagtactgct
ggtgctggcgcagggggtgcgttgcctgctgcagctggaggatcttcattgtatagattg
ccgaatagttctgttgggatgccgactggtggttatccagaggctgctcattatagcttg
tcttccgcaggtgcattccctaatcagcttcaccaaggagctggggcatcccctgctcca
agagttccacccggtgctatgtatcccagtgggccacctttctactga

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