Hibiscus syriacus (Rose-of-Sharon): 120159156
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Entry
120159156 CDS
T09559
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120159156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120159156
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120159156
mRNA degradation factors
5'-3' decay
Decapping complex
120159156
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
120159156
NCBI-ProteinID:
XP_039025742
LinkDB
All DBs
Position
Unknown
AA seq
795 aa
AA seq
DB search
MDASENPGRFGDTSTGDTVFDASQYTFFGKDVLEEVELGGLDEEEEELPAVGLDDEEFLF
DRDEGEVLRSLSDIDDLANTFSKLDPAFSGPRGSGIIGDGGSRQSSSAAEWTHGEEFPCW
LGQQPLGTESIPEGKRRSAQPLANLDPKHIYRTSSYPEQQQLPPQQQHQYCQNFSSEPIL
VPKPSYTSYSPHEGRSPQASPNQHAGHLNIPYMVGGPRMTSLPNLSSFSNSQLQPPGLYR
GPPFRGNIPQFAPGLSVSNLPSNQWGSQAKLYGDDSSILNNMLQKQLSHQNGLVPSQLMP
QLQSHQQRLQHPDQPSVGHFSGIQSQLFNPHLSPSPSQMNMVDAILGIGDLRDQRVKSAQ
KGRQNLRFSQQGFDSGRLKSGFGWPKFRSKYMSTDEIEGIVRMQLVATHSNDPYTDDYYH
QACLARKSAGAKLRHHFCPTQIRDLPPLARSNSEPHAFLQADALGRIHFSSVRRPRPLLE
VDPPNSSAVTNNDKKASDMPLEQEPMLAARVTIEDGICLLLDVDDIDRFLQFNQLQDGGS
QLRQRRQAFLEELATSLQLVDTLSKNGHTDDLAQKDDLVFLRIVSLPKGRKLLARFLKLL
PPGGELMLVVCMSIFRHLRLLFGVLPSDPGPAETTINLARVVSSCVHEMDLRALSVCLAS
VVCSSEKPPLRPIGSPAGDEASIILKSVLDRATKIMNDSRAAGNYNMTNLPLWKASFDEF
FNLLTKYCIYKYDTVMQSLRMQTKPSMAIDGSGAAKAIKREMPVDLLHACLPHLSDQQKK
QLWDLTQRPMLVEQS
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggatgcttctgagaatcctgggcgatttggcgatacttcaacaggagatacagtattt
gatgcttcgcagtatacatttttcgggaaagatgttctcgaggaagttgaattgggggga
ttagatgaggaggaggaggaattacctgcagtcggacttgatgatgaggagtttttgttt
gatcgagatgagggtgaagttttgagatccttatcagacattgatgatcttgctaataca
ttttcaaagttggacccagcttttagtggaccaagaggctcggggataattggtgatggg
ggatccagacaaagttcatctgcagccgaatggacacatggggaggaatttccttgctgg
cttggtcagcagccacttggaactgaaagtattcccgaagggaaacgccggtcagcacaa
cccttggccaatttggacccaaagcatatctacaggacatcctcataccccgagcagcag
cagctgccgccacagcagcaacatcaatactgtcaaaatttctctagtgaaccgatttta
gttccaaaaccttcttatacttcatactctccccatgagggcagatctcctcaggcttca
ccgaaccaacatgctggacacctaaatattccttatatggttggtgggccgcggatgaca
tctttgccaaacctctcttccttctcaaattctcagcttcaaccgccaggtttataccgt
gggccaccttttcgtgggaatattcctcaatttgctcctggcctgtctgtcagtaatctg
ccgtcaaatcaatgggggagccaggcaaaattgtatggagatgattccagtattttgaac
aatatgttgcaaaaacagttatcccatcaaaatggtttggttccttcacaattaatgcca
cagctgcagtcgcaccagcagagattgcagcatcctgatcagccttcagttggccatttt
tcagggattcagtcacaactatttaatcctcatctttctccttccccatctcaaatgaac
atggttgatgctatacttggtattggtgatctgagagatcaaagagtcaaatcagctcag
aagggtaggcagaatctacggttttcacagcagggctttgacagtggtagactgaagagc
ggttttgggtggcctaagtttagatccaaatacatgtcaactgatgagattgagggcatt
gtcagaatgcagcttgttgcaacccacagtaatgacccctacacggatgattattaccac
caggcttgtcttgcaagaaaatcggctggggcaaagttgagacatcatttctgcccgact
cagattagggaccttcctcccctagcacgttcgaattctgagcctcatgcttttctccag
gctgatgctcttgggaggattcatttctcttcggttcgcaggcctcgccctcttcttgaa
gttgaccctcctaattcatctgctgtcaccaacaatgataaaaaagcttctgatatgccc
ctggaacaggaaccgatgcttgctgctagagttacaatagaggatggtatatgccttctt
cttgatgtagatgatattgataggtttttacagtttaatcagttgcaggatggtggatcc
caactgagacagagacgacaggctttcttggaggagctggctacatcacttcagttggtt
gacacacttagcaagaatggtcatacagatgatcttgctcagaaggatgatcttgtgttt
ttacggatagtttccctccccaaaggtcggaagctacttgcaaggttccttaagcttctt
cctccaggtggtgagctcatgctagttgtctgcatgtccattttccgtcatttaaggctc
ttgttcggagtccttccctctgatccaggacccgctgaaactactattaaccttgcaagg
gttgtttcctcttgtgtccatgaaatggatctccgtgccctcagtgtctgtcttgcatct
gttgtttgttcttcagagaagccccctcttcgtcccattggaagtcctgctggagatgag
gcttcaattattctgaaatctgttcttgatagggcaacaaaaatcatgaatgattctaga
gctgctggcaattataatatgactaatctacccctttggaaagcttcatttgatgaattc
tttaacctccttaccaagtattgcatatacaaatacgataccgtgatgcagtccttgcga
atgcagaccaaaccaagtatggcaatcgatggatcaggtgctgccaaagctattaaaaga
gaaatgccagttgatctcttacacgcatgtttaccccaccttagtgaccagcagaaaaag
cagctttgggatctcactcaacggcctatgcttgtagaacagtcatga
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