Hibiscus syriacus (Rose-of-Sharon): 120159407
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Entry
120159407 CDS
T09559
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03013
Nucleocytoplasmic transport
hsyr03015
mRNA surveillance pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120159407
09122 Translation
03013 Nucleocytoplasmic transport
120159407
03015 mRNA surveillance pathway
120159407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120159407
03041 Spliceosome [BR:
hsyr03041
]
120159407
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120159407
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120159407
Spliceosome [BR:
hsyr03041
]
Complex C
Other components
EJC/TREX
120159407
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120159407
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
120159407
NCBI-ProteinID:
XP_039025925
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MGEIKDNDAYEEELLDYEEEDEKAPDSVSIKAADSVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSVVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVAGTPGRILAL
TRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVNR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITYVSSASDSDVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgagataaaggacaacgacgcctatgaggaagaacttctcgactatgaagaggaa
gatgaaaaagcccccgactctgtctccattaaggctgctgattctgttaaaaaggggtat
gttggaattcatagttcgggattcagagacttcctgctgaaaccagagctgcttcgagct
atcgtggattccggatttgaacatccttcagtagtgcaacatgagtgcatccctcaagct
attctgggaatggatgtgatctgccaagcaaaatctggtatgggaaagacagctgttttt
gttctatcaactcttcagcaaattgagccagttgctggtcaagttgctgcacttgttcta
tgtcatacaagagaattagcttaccagatttgccatgagtttgagaggttcagtacttat
ctgccagatattaaagttgctgtcttctatggtggtgtcaatatcaaggttcacaaggat
ttactaaagaacgagtgtcctcatattgttgctggaacccctggaaggattttggctctt
accagggataaagatcttagtctgaagaatgtgaggcatttcattcttgatgaatgtgac
aagatgcttgagtcacttgacatgaggagagatgtgcaagagatcttcaagatgactcca
catgacaaacaagttatgatgttttcagccacacttagcaaggaaatccgacctgtgtgc
aagaaatttatgcaagatcccatggaaatttatgttgatgatgaagccaagttgactctt
catggtctggtacagcattacattaaattgagcgagctagagaaaaaccgcaaattgaat
gatctccttgatgccttagatttcaaccaagtagttatttttgtcaaaagtgtgaacaga
gcagctgagctcaacaagttgcttgtggagtgcaatttcccctctatctgcatccattct
ggaatgtcccaggaagaaaggttgacacgatacaagagtttcaaggaaggtcacaaaaga
attcttgtggccacagatttagttggaaggggaattgatattgagcgtgttaacattgtt
atcaactatgatatgccagactctgctgatacctacctgcatagggttggtagagctggt
aggtttggcaccaaggggcttgcaattacatatgtctcatcggcatctgactctgatgtc
cttaatcaggttcaggaaaggtttgaggtggatataaaggagcttcccgagcagattgat
acttcgacatacatgccttcatga
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