Hibiscus syriacus (Rose-of-Sharon): 120160012
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Entry
120160012 CDS
T09559
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120160012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120160012
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120160012
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120160012
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
120160012
NCBI-ProteinID:
XP_039026414
LinkDB
All DBs
Position
Unknown
AA seq
661 aa
AA seq
DB search
MSGLLNSSINGSASNIPDSSGRAFATSFSGRSVAASPVFHHAGNIQGLHNIHGSFNVPNM
PGTLASRNSALSNVPTVGVQQPTGSLSGGRFASNNLPVTLSQLSLGSSHGHSGVTNRGGI
SVVGNPGFSSNTNGVGGSIPGVLPSSAAIGNRNAAPGLGVSPILGNAGPRITSSLGNMVG
GGNIGRSISSAGGLSVPGLASRLNLSANSGSGSLSVQGQNRLMSGVLPQGSQMISMLGNS
YPTAGGPLSQSHVQAVNNLSSMGMLNDVNTNDNSPFDINNDFPQLTSRPSSAGGSQGQLG
SLRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNGDYAMDMHQKEQLHDNTMLMMQSQHF
SMGRSAGFNLGGSYSSHRPQQQHAPSASSSVTSFSPVNNQDLLHLHGSDIFPSSHSSYHS
QTSGPPGIGLRTLNSSNTVSGMGYDQLIHQYQQHQNQSQFRLPQMSPLNQSFREPGLKSM
QATHSNPDPFGLLGLLSVIKMTDPDLTSLALGIDLTTLVLNLNSSENLHKTFGSPWSDEP
AKGDPEFTVPQCYYAKQPPALHQGYFSKFTVDTLFYIFYSMPKDEAQLYAANELYNRGWF
YHKEHRMWFIRVPNVEPLVKTTTYERGSYHCFDPKSFETIRKDNFVVHYEYVEKRPALPQ
H
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttactaaattcttctatcaacggatcagcatcaaatattccagacagtagt
ggacgcgcttttgcaacatctttctctggtcggtctgttgcagcctctcctgttttccat
cacgctggcaacattcagggcttgcataatattcatggtagctttaatgttcccaacatg
cctggtacactcgcatcaagaaactcagcattaagtaatgttccaactgttggggtccaa
cagcctactgggagcctatctggtggaagatttgcatcaaataatcttcctgtcactcta
tctcagctatctcttggcagctcccatggacattcaggagtaacaaatagaggaggtatt
agtgttgtaggaaatcctggatttagtagtaacacaaatggagttggcggttctatacct
ggggttctcccttcctctgctgcaattggtaaccgtaatgctgccccaggattgggagta
tccccaatcttgggaaatgcaggtcctaggataacgagttctttaggaaacatggttggc
gggggcaacattgggaggagtataagctctgctggtggattatctgtacctggtcttgca
tctcgtctgaatttaagtgccaatagtggatctggaagtttaagtgtgcagggacagaat
cggttgatgagtggtgtgcttcctcagggatctcagatgatttcaatgttaggcaattct
tatcctactgctgggggtcctctttcccagagccatgtccaagctgtgaacaatcttagc
tccatgggaatgttgaatgatgtgaacacaaatgacaattctccttttgacataaataat
gatttccctcagctgacaagtcgtcctagttctgctggaggttctcaaggacaattgggt
tcattgcgaaaacaaggtcttagtcccattgttcaacaaaaccaagaatttagcattcaa
aatgaagatttccctgctttaccaggatttaaaggtggtaatggtgattatgcaatggat
atgcaccagaaagaacaacttcatgacaataccatgttgatgatgcaatctcaacacttt
tctatggggagatctgcaggatttaacttgggtggatcgtattcatcccatcgcccacag
cagcaacatgctccatcggccagtagtagtgttacctccttttcacctgtaaacaaccaa
gatcttctccatttgcatggctcagatattttcccatcttcacattcgagctaccactca
cagaccagtggaccacccgggattgggctaagaactctaaattcatcaaatacggtttct
ggtatgggttatgaccaactcatccatcaatatcagcaacaccaaaaccagtcgcagttt
cgtcttccacagatgtcacctttgaatcagtcatttagggaacccggtctgaaatcaatg
caggctacgcactctaatcccgacccatttgggttacttggtttgctaagtgtaataaag
atgactgatcctgatctgacttcccttgctcttggaattgatctgacaacacttgtgtta
aatttgaattcatcggaaaatcttcacaagacttttggttctccatggtctgatgaacca
gctaagggtgacccagagttcactgtgccacaatgttattatgctaagcaaccacccgct
ttacatcaaggttatttttcaaagttcacagtggacacattattctatatattttacagc
atgccaaaagacgaagctcagttatatgctgcaaatgaactttataatagaggctggttt
taccacaaggagcaccgaatgtggttcataagggttcccaatgttgagccactagtgaag
acaaccacatatgagaggggttcttaccactgtttcgatccgaaatcatttgaaacaatc
cgcaaggataattttgttgtccattacgagtatgtggaaaagagaccagctttacctcaa
cattaa
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