Hibiscus syriacus (Rose-of-Sharon): 120160721
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Entry
120160721 CDS
T09559
Name
(RefSeq) NPC intracellular cholesterol transporter 1-like
KO
K12385
Niemann-Pick C1 protein
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
120160721
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
120160721
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hsyr02000
]
120160721
Transporters [BR:
hsyr02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
120160721
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
NPC1_MLD
Patched
Motif
Other DBs
NCBI-GeneID:
120160721
NCBI-ProteinID:
XP_039027001
LinkDB
All DBs
Position
Unknown
AA seq
1341 aa
AA seq
DB search
MQSSRSVPHSLTRLNDFSSFPFYIYIYFALTQTSKAAAEGFLQLNRMDSSRRRSALPSGF
LSFVSLFQVLLIIQVAVSQPSNNELRQRHAEGYCAMYDICGARSDGKVVNCASGSPAVKP
DELLSSKIQSLCPTITGNVCCTEAQFDTLRSQVQQAIPFLVGCPACLRNFLNLFCELSCS
PNQSLFINVTSVSQVRNNLTVDGIDFYITDDFGEGLYESCKDVKFGTMNTRAMEFIGAGA
KNFKEWFAFIGRRAPNNLPGSPYAIQFLPTVPDSSGMKPMNVSTYSCGDVSLGCSCGDCA
SSPVCSNTAISTSNNGAKCSVRIGSLKAKCVDLALAILYVVLVSVFFGWGLFHQTRKRSR
SFRMKPFLDTTDGGQSDSLNRQKAENLPMQRLEDANQISTAVRLSVVQGYMSNFYRKYGL
WVARHPTLVLSLSVGMVLLLCLGLVRFKVETRPEKLWVGPGSKAAEEKRFFDSNLSPFYR
IEQLILATIPDPLDGKSPSIVTEENIKLLFEIQKKVDGIRGNYSGSRISLTDICMKPMGE
DCATQSVIQYFKMDPSYDADDRLDHVNYCFQHYTSAESCMSAFKAPVDPSTVLGGFSGSN
YTEASAFIVTYPVDNALDKEGNATQKAVAWEKAFVQLAKDELLPMVQSKNLTFSFSSESS
IEEELKRESTADAITILISYLVMFAYISLTLGDTPRLSSFYISSKVLLGLSGVVLVMLSV
LGSVGFFSAVGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQPLDLPLEGRISNALVE
VGPSITLASLSEVFVFAVGSFIPMPACRVFSMFAALAVLLDFLLQVTAFVSLIVFDFLRA
EGRRVDCFPCIKASSTYAESEKGIGGRKPGLLLVCFCFHFQVVHAPILSLWGVKILVVSV
FVAFSLASIALSTRIEPGLEQKIVLPQDSYLQGYFNNVSEYLRIGPPLYFVVKNYNYSSE
SIDTNKLCSISQCNSDSLLNEIARASLTPESSYIAKPAASWLDDFLVWVSPEAFGCCRKF
TNGSYCPPDDQPPCCSANDSTCGLSEVCKDCTTCFRHSDLHNDRPSTAQFKEKLPWFLDA
LPSADCSKGGHGAYTSSVELQGYENGIIKASSFRTYHTPLNKQIDYVNSMRAARQFASRV
SDSLKMEIFPYSVFYMFFEQYLDIWKTALINLAIAIGAVFIVCLVITCSLWTSAIIMLVL
AMILVDLMGVMAILGIQLNAVSVVNLVMSVGIAVEFCVHITHAFSVSSGNRDERVKEALG
TMGASVFSGITLTKLVGVLVLCFSKTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSMFG
PPSRCIKIEKQDERPSVSSQP
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcctcccgttcagtccctcacagcctcactcggcttaacgacttcagttctttt
cccttttatatttatatatattttgctctcactcagaccagcaaagctgcagcagaaggc
tttctgcagttaaacagaatggactcctctcgccggagatcagcgcttccttctggattt
ctttcattcgtttccttgtttcaggttttattgattatacaagtggccgtttcgcagccg
agcaataatgaactaaggcagagacatgctgaaggatattgtgcaatgtatgacatttgc
ggagcacgaagtgatggcaaagtagtaaactgtgcttctggttctcctgcagtaaagcct
gatgagttactttcgtccaagattcaaagtttgtgcccaacaatcaccggaaatgtttgt
tgtacagaagctcaatttgatacactacggagtcaagtccagcaagcaattcctttcctt
gtaggctgtccagcatgcttgagaaactttttgaatctgttctgtgagctctcatgctct
ccaaatcaaagtttgttcatcaatgtgacttctgtgtctcaggtcagaaataatttgact
gtggatggaattgacttttacataactgatgattttggtgagggtttgtatgaatcttgc
aaggacgtcaagtttggtaccatgaatactcgtgctatggaatttattggtgctggtgct
aaaaatttcaaagagtggtttgctttcattggtaggcgagcaccgaataacttgccaggt
tcaccatatgccattcaattcctgccaactgttcctgattcatctgggatgaaacctatg
aatgtatccacttattcatgtggagatgtttcactgggctgttcttgtggtgattgcgct
tcatctcctgtctgttctaatacagctatatctacttccaataatggggctaaatgttca
gttcgaattggatctcttaaggccaaatgtgtcgatttagctttagcaatcctctatgtt
gtattggtttctgtgtttttcggatggggcttgttccatcagacaagaaaaagaagtcga
tcttttcgaatgaaaccatttttggatacaacagatggtggtcaatctgattctcttaat
aggcaaaaagcagagaacctccccatgcagaggctagaagatgccaatcaaattagcact
gcggttcgactttctgtcgtgcaaggatacatgtcaaacttttacaggaaatatggacta
tgggttgctagacatccaacccttgtattgagtttgtccgtgggaatggttcttctactt
tgcttgggcctagtccgtttcaaggtggaaacacgaccagagaagctatgggtaggacct
gggagtaaagctgcagaagagaaacggttttttgacagcaacctatctcctttttacaga
attgagcagctaatactagcaacaattccagatcccttggatggtaaatcgcccagcatt
gtgaccgaagaaaacattaagttgttatttgaaattcagaagaaggttgatggaatccgg
ggaaattattctggctcaaggatatctttgacagatatttgcatgaagccgatgggtgag
gattgtgccacacaaagtgttatacagtatttcaaaatggatccaagttatgatgctgat
gatcgactggatcatgtcaactattgttttcagcattatacctctgcagaatcatgtatg
agtgcttttaaagcaccagttgatcctagcaccgtattaggaggtttctctgggagcaac
tatactgaggcttctgcatttatagtaacttatccggtagacaatgctcttgacaaagaa
gggaatgcaactcaaaaggctgtggcttgggagaaggcctttgttcagttagcaaaggat
gagttgttgcctatggtgcaatctaaaaatttgacattttcgttttcttcggaaagctcc
atcgaggaggagttgaaaagagaaagcactgcagatgccataaccatattgataagctat
cttgtgatgtttgcttacatatctctgaccttgggtgatacgcctcgattatcttccttt
tacatttcatctaaggtgttgcttggcctttctggtgttgtgcttgtcatgctctcagtt
cttggatcagtaggatttttcagtgctgttggagtaaaatctaccctaatcattatggaa
gttattccttttcttgttcttgcagttggagtggacaatatgtgcatactggtgcatgct
gttaagcggcaacctttggacttacctctagaaggaagaataagcaacgcacttgtggaa
gtgggaccatcgataacacttgctagtctatctgaggtttttgtgtttgcagttggaagt
ttcattcctatgccagcgtgtcgagtattttccatgtttgcagcactggccgttttgttg
gacttccttctgcaggtcactgcttttgtttctctgatagtgtttgactttttgcgagcc
gagggtagaagggttgattgttttccatgtataaaagcatcatcgacatatgctgaatcc
gagaaaggcattggtgggagaaaacctgggctattgcttgtttgtttctgttttcacttt
caggtggtacatgctcccattctcagtctttggggagtgaaaattttagtcgtttctgtt
tttgttgccttttcattggctagcattgcattgtccacacgaatcgagcctggtttggaa
caaaagatagttcttccccaagactcatatcttcagggctatttcaataatgtttcagag
tatctcagaattgggccgccactgtattttgtcgtgaagaactataattatagttcagaa
tcaatagatacgaataaattgtgctccatcagccaatgtaactcagactctcttttaaat
gagatagctagagcatccttgacaccagaatcaagctatattgctaagccagctgcttca
tggcttgatgattttcttgtatgggtatctccggaagcattcggttgctgtcggaaattt
actaatgggagttattgtccccctgatgatcagcctccttgttgctctgccaatgactct
acttgtgggttgagtgaagtatgcaaagactgcaccacgtgtttccgtcactcagattta
cataatgatcgaccctctacggctcagtttaaggagaaacttccatggttccttgatgct
ttaccttctgctgattgttcaaaaggtggacatggagcttacactagcagtgtggaactt
caaggatatgaaaatggtattattaaggcatcatcattccgcacctaccatacacccctc
aataagcagattgattatgttaactcaatgagggctgctcgacaatttgcttcaagggtt
tcagattctttaaagatggaaatcttcccatattccgtgttttatatgttctttgagcaa
taccttgatatatggaagacagctctcatcaaccttgcaattgcaattggtgcggtattt
attgtttgtttagttattacatgcagtttgtggacctcagcgatcatcatgctggtgttg
gcaatgattctcgttgatcttatgggtgtgatggctattctcggaattcaactcaatgcg
gtctcggttgttaatcttgttatgtcagttggcattgcagttgagttctgcgtgcatata
acacatgcgttttcggtaagcagcgggaatagagatgaaagggtaaaggaagctctgggt
acgatgggagcttctgtcttcagtggaatcactttgacaaagctagtaggggtgctggtt
ctttgcttctcaaagacggaagtttttgtggtctattacttccagatgtacctagcgttg
gtccttctaggtttcttacacgggcttgtatttttgccggtggtgttgagcatgtttggt
ccaccgtctagatgtataaaaatcgagaaacaagacgagcggccgtcggtttcatcacag
ccttaa
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