Hibiscus syriacus (Rose-of-Sharon): 120161540
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Entry
120161540 CDS
T09559
Name
(RefSeq) uncharacterized protein LOC120161540 isoform X1
KO
K18734
protein SMG8
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120161540
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
120161540
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
120161540
NCBI-ProteinID:
XP_039027684
LinkDB
All DBs
Position
Unknown
AA seq
1213 aa
AA seq
DB search
MDFPSPPSMRVLTRPPPSPVPTSSNPPPPLPPSSPSLPSSPDGVVVVGFISRRPDNSFQL
INRVVDSNVFGSGQMDRVLSLDNDEQKDWFKHRRISYYHEEDKGILFLQFSSNGCPVFDG
SMASGSDFDGVLEEREFGDLQGLLFMFSVCHLIIYIQEGSCFNTQNLKKFRVLQAAKHAL
IPYVKSRTSPLPSRPHSSSSSRTSATPTAANTSPGRTGGMLGRNAAAISLMLGVGSYTSL
FPGQCTPVMLFVFIDDFSDVPNSNANNIEESVKASSLNHSSNSSSLAKPALPTKGSASVV
VLARPASKSEGGFRKKLQSSLEAQIRFLIKKCRTLLGSEGSHSGSRSASVSNLAPLFSLD
ASRAVVLLDKSTTKKGESLEFATGLVEDVLNGKATSDSFLLETHSQSSNKEDLSSLKEFI
YRQSDILRGRGGLTNTNSGPAAGVGMVAIAAAAAAASTASAKTLTTPELPTLDIWLSSSR
LILNGLLSAKRGCIDETEIGKRKPRRSTTSDEGEGVASRSSDSLDIAVSWLESGKGLNTK
FSSLWCERALPAAKEIYLKDLPACYPTSQHEAHLEKALHAFHSMVRGPAVELLAKKLEED
CTSMWKSGRQRCDAVSLTGKPCLHQRHDVEAGELPSGALMKPHSSGYVFLHACACGRTRR
LLSDPFDFESANISFNSFPECDKLLSALQLPEVSSQGPIQPSSWSLIRIGSARYYEPSKG
LLQSGFSTGEKFLLKWKIVLEKQKTPNGLSTRSTQLGSVGRSSRDPKAETNADVQLKKAN
STEVCSGERENVVENPKKTWDISKLNGNKISFGRGLPNFMMKKPFSEVVAGSAAADSGFP
PLQQRKQPLSGIEKGTKKHKASALSLEGAHSTVDQGSQKPIQMSSVTPNLNQVISDASAD
SDPFVRIGSNFVPVNMSNDEKAKLNSKMKHVMAYVGFEHECPHGHRFLLNPEHLNQLQPP
YSLFEECSVEASDLTSADSSTVGKNNGQGKVHRNTNGIKVASVNKVKNKDEAKKVVGNSN
VIKDGLPLLPMREEHNQTSKNVADLPVAVRDLEKGFHSVSLDDDGSSFSMVNRDLPIYLK
CPHCRSIRNKKEPSKVKFASTISQLQRIFLVTPPFPVVLAACPVIQFKASCLPSSVPDRE
QKLQFSLGCKVILPPESFLVLRLPFIYGVQVDDKSVHSLNPSEDKPEDTGWIVRGTALQL
MSKGIGLNEGFYK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atggactttcctagcccgccttcaatgcgggttttgacccgcccacctccttcgcccgta
cccacttcttcgaatccgccccctccgttaccaccttcctctccttcacttcccagctct
cccgacggtgtcgttgtggtgggtttcatatctcggagacctgacaactctttccagctc
attaacagagttgtagactccaacgtgttcgggtcaggtcaaatggaccgggttttgtct
cttgacaacgatgaacaaaaggattggttcaagcataggaggattagttactatcatgaa
gaagataaagggattttgttcttgcagttttcttcaaatggatgcccggtttttgatggg
tcaatggcttccgggtcagattttgatggggttttagaggaacgggagttcggggatctt
caaggattgctttttatgttttctgtgtgccatttaatcatatacattcaggagggatct
tgcttcaatactcaaaatctgaaaaaatttcgggtgttgcaagctgctaagcatgcatta
ataccatatgtaaaatctcgaacatcaccattgccatcaaggcctcattcttcgtcgtct
tctcgcacttcagcaacaccaactgctgccaacacttctccaggtagaactggtggcatg
ttgggtcgcaatgctgcagctatctctctcatgttaggtgtaggttcctatacgtctttg
ttcccaggccagtgtaccccggtgatgctatttgttttcattgatgatttctctgatgta
ccaaattctaatgctaataacatcgaggagtcagtaaaggcatcctcacttaatcattct
tctaattcaagcagtttagcaaagccagccttgcccacaaaaggttctgcttctgtagta
gtgttggcacgtcctgcaagtaaatctgaaggtggtttccggaagaaactgcagtcatcc
cttgaggcacagattcggtttttaattaagaaatgccgaacactattgggttcagaaggc
agccacagtgggtcaagaagtgcgagtgtttcaaatttagcccctctgttttcgcttgat
gcatccagggctgttgtgctgctggacaagtcaacaactaagaaaggggaatctctggag
tttgccactggtcttgtggaagatgttttgaatggaaaagcaacttcagattcctttttg
ctcgaaactcatagtcagagttcaaacaaagaagatctatcatctttgaaggaatttatc
tacaggcagtcagatattttgaggggaagagggggattgactaacaccaatagtggccct
gctgctggtgttggtatggtggccattgctgccgccgccgccgctgcctcaactgcctct
gcgaagacgttgactacgcctgaactcccaactttagatatatggctgtcttctagtcgg
cttattttgaatggactactatctgcaaagcgtggttgtatagatgaaactgaaattggt
aaaagaaaacctcgtcgaagtactacttctgacgagggtgaaggggttgcttctagaagc
agcgactctctagatattgcagtatcttggttggaaagtgggaaagggcttaacacaaag
ttctctagtttgtggtgtgaaagggcccttccagctgcaaaagagatttatttgaaagac
ttgcctgcttgttatcccacatcacagcatgaagctcatttggaaaaggctctgcatgct
tttcactctatggtcaggggacctgcagtggaactgcttgcaaagaagctggaggaagat
tgcacctcaatgtggaaatctggaagacaacgttgtgatgctgttagtttgactggaaaa
ccatgtttgcaccaaagacatgatgttgaggcaggtgagttgccttcaggagctttgatg
aaacctcattcaagtggatatgtctttcttcatgcttgtgcttgtggtcggacgcggcga
ttgctatctgaccctttcgattttgaatcggcgaacatttccttcaattcctttcctgaa
tgtgacaagcttctgtcagcgctccaactaccagaagtaagcagccaaggaccaattcaa
ccatcttcctggagtttgattcgtattggcagtgcaaggtactatgaaccttctaaaggc
ttacttcagagtgggttcagtaccggtgagaagtttcttttaaagtggaaaatagtttta
gagaaacagaaaaccccaaatggcttatcaacaagatctacacaacttggttctgtgggt
aggtccagtagagatcctaaggctgagactaatgctgatgttcaattgaagaaggctaat
tccacagaggtctgctctggagaaagagagaatgttgttgaaaatccaaaaaaaacctgg
gatatcagcaagttaaatggtaacaagatcagttttggtagaggccttcccaatttcatg
atgaaaaaacctttttcggaagttgttgctggatcagcagctgcagattcaggattccct
cctcttcagcagaggaaacagcctttatcagggatagaaaaaggaacaaagaaacataag
gcaagtgctctcagtttggaaggggctcattcaactgttgatcaaggatctcaaaaaccc
atacagatgtcatctgttactccaaacttgaatcaagtaatttctgatgctagcgctgat
agtgatccttttgtacgaattggcagtaattttgttcctgtgaatatgagcaatgatgaa
aaggcaaaactgaactctaagatgaagcatgtgatggcatatgttggttttgagcatgag
tgccctcatggccaccgtttcttattgaacccagagcatctcaaccaacttcagccccca
tattcattgtttgaagaatgctctgtggaagcttcagacctcacatcagcagattcttca
acagtgggcaagaacaatgggcagggtaaagttcatcggaatacaaatggtattaaagtt
gcttctgtaaataaggtgaaaaacaaggatgaggcaaaaaaggtggtgggaaatagtaac
gtcatcaaagatgggctgccgctacttcctatgcgtgaagagcataatcaaacatctaag
aatgtagcagatctgcctgtcgctgtaagagaccttgaaaaaggcttccattctgttagc
ctcgatgatgatggatcctctttctccatggtaaatagagatttaccaatatacctgaag
tgtccacactgcaggtctatcaggaataaaaaagaaccgtcaaaggttaagtttgcaagc
acaatatcgcagcttcagagaatttttctggtcacacctccctttcctgttgttttggca
gcttgtccagttatacagttcaaggcatcttgcttaccctcatcggttccagaccgcgaa
caaaagttgcagttcagccttggatgtaaagtgatcttaccaccagagagttttcttgta
ctgagactgccatttatatatggtgtacaagtggatgataaaagtgtgcattctctgaac
ccatctgaagataaacctgaagatactggttggattgttaggggcacagctttgcaactt
atgtccaaaggaattggtctgaatgaggggttttacaaatag
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