Hibiscus syriacus (Rose-of-Sharon): 120161541
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Entry
120161541 CDS
T09559
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120161541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120161541
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120161541
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_10
ARM_TT21
TPR_MalT
TPR_8
DUF627
SRP_TPR_like
Motif
Other DBs
NCBI-GeneID:
120161541
NCBI-ProteinID:
XP_039027692
LinkDB
All DBs
Position
Unknown
AA seq
851 aa
AA seq
DB search
MDSRDSLSPLAPNRDGSAGDDVGGLPVTVALAKEAALHFQSRKFAECVDVLNQLKVKKEG
DPKILHNIAIAEFFWDGCSDPKKLLEVLKNVKKRCEELAHASREQESGSSSGNKFTSDSK
GSGTTIQQFSSDSAGVIYSDEFDTSVAALNIAVIWFHLHEYSKALSILEPLYKNIEPIDA
TISLHICLLLLDVVLACHVASKSADVLNYLEKAFGISNVSQGEIGNTASQQSTNLVVESS
SVPSSPFVSDASSPDLAGIVNASENPVSRNLLDDRLDEMFSTLDIGGHNLTRPAGLTSVN
DHPRITVDGSISGVDLKLRLQLHKVRVLLLTRNLKLAKREVKHAMNIARGRDSSMALLLK
AQLEYTRGNHRKAIKLLMASSNRTDAAISSMFNNNLGCIYYKLGKYHSSAVFFSKALGIC
SSLQKEKPLKLLTLSQDKSLLITYNCGLQYLACGKPILAARCLQKACLIFYRRPLLWLRL
AECCIMAVAKGLVKERQTPSDRSEIRVNVIGKGRWRKLLIDYGTSRSGHVDSVEKNDWAL
GSDGQPKLSLPLARQCLYNALHLLNCSEWSNSKSVLPSNSSLEERETSDGPSSKNPIHKK
LPGINSLASTMLAGLVNSNGDLKETKGGANHEVLQNSVSYYEDIHRRENQMIKQTLLANL
AYVELELDNPLKALSAALSLLELPGCSRIYIFLGHVYAAEALCLLNKPKEAAEHLAIYLS
GGNNVELPFSQEDREQWQVEKRVDCDEPSGGAAANNPSHEGLQEYMFLKPEEARGTLYAN
LAAASAIRGELDLALHFVKRALSLVPNSSEATMTAIYVDLMLGKSQDALSKLKHCSHVRF
VPSSLQLNKSS
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcgagattcgttatcgccgttggctccgaatcgggatggctccgccggtgac
gatgtgggaggccttcccgtcactgtcgcactcgctaaagaagcagctcttcatttccaa
tctagaaagttcgctgagtgcgttgatgtgctgaatcagctaaaggttaagaaagaaggc
gatccgaagattcttcataatattgcaattgcggagtttttttgggatggttgctcagat
ccaaagaagttgcttgaggtccttaagaatgtcaagaagagatgtgaagagcttgctcat
gcatctcgggaacaggagtctggtagcagttctggtaataaatttacttcggactcaaaa
ggaagtggcacaactatacagcagttttcttcagatagtgctggtgttatttactcagat
gaatttgatacctctgtggctgctctaaacatagcagtcatctggttccaccttcatgaa
tattcaaaggctttatcaattcttgaacctctgtataaaaacattgagccaatagatgcg
acaatatcccttcatatctgccttttgttgctggatgttgtgctagcttgccatgttgct
tcgaaatctgctgatgttttaaattatttggaaaaagcatttggcatcagcaatgtgagc
caaggagaaattggtaacacggccagtcaacaatccacgaatctagttgtagaatcttcc
tcagttcctagcagccctttcgtctctgatgcatctagtccagatttagctggtattgta
aatgcttctgagaatcctgtatctagaaatttattggatgaccgactggatgaaatgttt
tcaacactggatattggtggacataacttaacacggcctgcgggtcttacatctgtaaat
gatcatccccggatcacagttgatggatctatctctggtgttgatttgaaactcaggttg
caacttcacaaggttcgggttttactgctaactagaaatctaaagctagcaaagcgtgaa
gtcaagcatgctatgaacattgctcgtggtagagattcatctatggctctgctcttgaag
gctcagcttgagtatactcgtggaaaccatcgaaaagccatcaagttgttgatggcgtca
agtaatcggacagatgcagcaatttcaagcatgtttaacaacaatctaggctgcatttac
tataaacttgggaagtatcattcgtctgcagttttcttttccaaggcactcggtatttgt
tcatctcttcaaaaggagaagcctttaaagctattaacactctcacaggataaatctctc
ctcataacatataactgtgggttgcagtacttggcatgtgggaaaccaatacttgccgct
cgttgtttacagaaggcatgcttaattttctacagaagacccctcttgtggcttcggctc
gccgaatgttgtataatggctgtagcgaaagggcttgtaaaagaaaggcaaactccatca
gacagatcagaaattagagtcaatgttattggcaagggtaggtggaggaaacttctgatt
gactatgggacttcaagaagtggacatgtagattctgttgaaaagaatgattgggcttta
ggcagtgatgggcagcctaagctttcattaccccttgctaggcaatgtctctataacgcg
ctacacttgctgaactgttctgagtggagtaattctaaatctgttttaccctccaattca
tccttggaggagagagaaacgagtgatggaccatcttccaagaacccaatccataagaag
ttacccggtatcaattccttggcttcaaccatgttagctggtctagttaactcaaatgga
gatttgaaagagacaaagggaggagctaatcacgaggttcttcagaactctgtctcctat
tatgaagacatccacagaagagaaaatcagatgattaagcaaactcttcttgctaaccta
gcatatgtagagttagaactggataatcctttgaaggccctctctgctgcgctatcgctg
ttagaactaccaggttgttcaagaatttacatttttctaggtcacgtctatgcggcagag
gcactatgtttactgaacaaacctaaggaagctgcagagcatttggccatttatttgtct
gggggcaataatgttgaattgccgtttagtcaagaggaccgtgagcagtggcaagtggaa
aaacgtgtcgattgtgatgaacctagtggaggagcagctgccaataatccttctcatgag
ggtttgcaggaatacatgtttctgaagccagaagaggctcgtggaacgctttacgcaaat
cttgccgctgcgtctgcaatacgaggtgaacttgacctggctctccattttgtgaagcga
gcgttgtccctagttccaaacagcagcgaagccactatgaccgcaatttatgtcgatctc
atgctgggtaagtcgcaagatgctctgtccaagttaaaacattgtagtcatgtcagattc
gtacccagcagtctacagttgaataaatcctcctaa
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