Hibiscus syriacus (Rose-of-Sharon): 120161720
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Entry
120161720 CDS
T09559
Name
(RefSeq) uncharacterized protein LOC120161720
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120161720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsyr03000
]
120161720
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120161720
04121 Ubiquitin system [BR:
hsyr04121
]
120161720
Enzymes [BR:
hsyr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120161720
Transcription factors [BR:
hsyr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120161720
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120161720
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120161720
Ubiquitin system [BR:
hsyr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120161720
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
Baculo_IE-1
RRM_1
ALMS_repeat
zf-RING_2
zf-UDP
Motif
Other DBs
NCBI-GeneID:
120161720
NCBI-ProteinID:
XP_039027862
LinkDB
All DBs
Position
Unknown
AA seq
1037 aa
AA seq
DB search
MSDVGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHLMDMAEKDETEGRCPACRTAY
DKEKIGRTAANCERLFAEINLERKMKSQKAKTKSSEGRKQLSTVRVIQRNLVYIVGLPLN
LADEDILQRREYFGQYGKVLKVSLSRTAAGAIQQFPNNTCSVYITYSKEEEVIRCIQSVH
VFVLDGRPLKACFGTTKYCHAWLRNMPCNNPDCLYLHAIGSQEDSFTKDEIISVYSRVQQ
ITGTTNNFQRRAGTMLPPPVDDYCPNSSSTAKNISKSAPNNTILTGQNDSPSNGSPGRSL
ALPAGASWGTRALNQPQPASLSCSNGPSKQKSDTISCTSPFLSAVMNTNRACTLHNDDVK
KPSEEIHATHMKGKPDLLKPLKRNSGSDGRTTAQEKPTSPDGVPASKSLSNQISCPPASN
YNDQGTNIPTVTSAIFDHIEKSFITSNEKAGSISSTDEKVQSICSDVSSLTLDRNASSGH
SNVIRPSSSASDHGSSSSSSSRGLQQCYREHYLEPLNSATAERPLTSPSRVSVSKGQSDW
RIDTQTRVVQNTSFEVEEDTSFDNQRLNDPEVISRPNYMPNSPISLHLSNHSKSHSFQYS
DSFGAVNLNGDTAFVDNEVSGSLQLHGSGVLSISNGYPEKYIGSSSGSVITSEDYLLPSN
QGKVEQVGRLIDNAENNAAKETGENSIISDILSLDFDTWDESLSSPQSLAKLLGDTDNQQ
FNSLKFSSSGKALNNNQSRFSFARQEDSKYQPFDVESSSSIFGQMPQNRLSKQDLAESRD
LYLNKFEISNGFSPNNFDEYNIFSGSPSISPSSKLSVSRAQVSAPPGFFAPSRTPPPGFS
SHERVDHGFDTSCNHLDSSSLLRNSYQAPASCGVGGAGDIEFMDPAILAVGKGRLQGGLT
NSGLDMRSNFSLRIGPYENEARFQLSMQRSFSPHRNLRYNVGDSFSSLNDSFGVSSRLMD
QSQVNNISPYAQLSLQQSRNSHMSNGPWDGLNEFHGGNNVGMAELLRNERLGFNKFYSVY
EDSKYRMGDLYNRTFGM
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgtcggagaaaagacctgtcccctttgcgcggaggagatggatttgactgat
cagcaactcaagccttgcaaatgtggctacgagatatgtgtttggtgttggcatcacttg
atggatatggctgagaaggatgaaaccgagggaaggtgcccagcttgtcgtactgcttat
gataaagaaaaaattggacgaacagcagctaactgtgagaggttgtttgctgaaattaat
ttggagagaaaaatgaagtcacaaaaggcaaagactaaatcatctgaaggaaggaagcag
ctgagcactgtgcgagttattcaaaggaatcttgtttacatagttgggttgccacttaat
ctggcagatgaagatattcttcaacgccgagaatattttggtcaatatgggaaagttcta
aaagtatctttgtctaggacagcagctggtgccattcagcaatttccaaacaatacatgt
agtgtatatattacttactcaaaagaagaggaagtgatccgttgtatccaatctgtacat
gtatttgtcttggatggtagaccattgaaggcatgctttggtacaacaaagtactgtcat
gcatggctaagaaatatgccttgcaacaatcccgattgtctatatttgcatgcaattggt
tctcaagaggatagtttcaccaaagatgagattatatctgtgtattcaagggttcaacaa
ataactggtacgacaaacaattttcaacggcgtgctgggactatgttacctcccccagtg
gatgattattgccccaacagttcgtctacagcaaaaaacatttctaaaagtgctccaaat
aatacaatattaaccggtcaaaatgattctccctcaaatggaagccctggtagatctctt
gctcttcctgctggagcatcatggggaactcgtgctttaaaccagccacaaccagccagt
ttatcatgttcaaatggaccgtctaagcagaaatctgacaccattagctgcacatcacca
tttttatctgccgtaatgaacacaaatcgggcttgtacattacataatgatgatgtaaag
aaaccatctgaagagatccatgctacacatatgaagggtaaacctgatttgttaaaaccc
ttaaaacgtaacagtggttcagatggtcgaactactgcacaagagaaacctacttcaccc
gatggagttcctgcttctaaatcattgagcaaccagatatcttgcccaccggcatccaat
tataatgaccagggcactaatataccaactgttacaagcgccatctttgaccacattgag
aagtcttttattacctccaatgagaaagcagggagtatttcgtctactgatgagaaggta
cagagcatatgctctgatgtctcatcgttgaccttagataggaatgcctcaagtggccat
tccaatgtcattagacctagcagttcagcttctgatcatggatcaagcagctcttctagt
agtcgggggttacaacaatgttatagagagcattatctagaacctttaaattctgcaacc
gctgagagacccctgacatctcccagtagggtgtctgtttctaaagggcagtctgattgg
agaattgatacacaaactcgagtagtgcagaatacaagctttgaagttgaagaagacacg
tcttttgataatcaaagactcaatgatccagaagttattagccgaccaaattatatgcct
aattcaccaatttcacttcatttatcaaatcattctaagtcccattcttttcaatacagt
gattcttttggtgctgttaatttgaatggtgatactgcctttgtagataatgaagttagt
ggcagtttacagcttcacggatccggtgttttgtctatatcaaatgggtaccctgagaag
tatataggtagtagtagtggttctgttattacgtcagaagactaccttctgccttcaaat
caagggaaagtggaacaggtgggaagattaattgataatgctgagaacaatgctgccaaa
gaaacaggagagaacagcataatttcagacatattgtcactagattttgacacatgggat
gagtccctaagttcgcctcagagcttggccaagttgttgggtgacactgacaatcagcag
tttaattctctcaaattttctagttcagggaaggctctgaataacaatcaatccagattc
tcgtttgcaagacaggaggattctaaatatcaaccttttgatgttgagtcctcgtctagt
atttttggtcaaatgccacagaaccggctttctaagcaagatttagctgaaagcagggat
ctctatctgaataagtttgaaatttctaatgggttttctccaaataactttgatgaatac
aacatttttagtggcagcccttcaatttccccttctagtaagctttctgtttcaagagct
caagtgtcagccccacctggattctttgctcctagcaggacaccacctcctggcttttct
tctcatgagagagtagaccatggttttgacacatcatgtaatcacttggactcttcgtcc
ctgttaagaaactcttatcaggctccagcaagttgtggtgttggtggtgctggagatata
gaatttatggatccagcaatattggcagttggtaagggtagacttcagggagggctcacc
aattcaggcttagatatgagatcaaacttttctctacggataggtccctacgaaaatgag
gccagatttcaactatctatgcagagatctttttctcctcatcggaacctaagatataat
gttggggacagcttttcttctctgaatgactcttttggagtttcttctaggctaatggat
caatcacaagtgaacaatatatccccatatgcgcagttgtctctccaacagtcgaggaat
tcacatatgtcaaatggtccctgggatggtttgaatgagttccacggtggaaataatgtt
ggcatggctgagttgctcagaaacgagagattgggatttaacaagttctattctgtttat
gaagattcaaagtacaggatgggtgatctatataacagaacattcgggatgtga
DBGET
integrated database retrieval system
