Hibiscus syriacus (Rose-of-Sharon): 120161855
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Entry
120161855 CDS
T09559
Name
(RefSeq) exosome complex component csl4-like
KO
K07573
exosome complex component CSL4
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120161855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120161855
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
120161855
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
120161855
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
S1_RRP4
Ribosomal_L27
Motif
Other DBs
NCBI-GeneID:
120161855
NCBI-ProteinID:
XP_039027997
LinkDB
All DBs
Position
Unknown
AA seq
151 aa
AA seq
DB search
MEKSDEMVTPGEVLGRATELKAGKGAYVASQNNTIYASLTGFRRIQPPPPDSPDQRPTVE
VTGHKAHGPVPEPGSVVIARVTKVMARTASADIMCVGPKSVREKFTGIIRQQDVRATEMD
KVDMHSSFHPGDIVRAVVFSWRCAGLLPING
NT seq
456 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaatcagatgagatggtaacgccgggagaggtactgggaagagccacagagctg
aaagcagggaaaggagcgtacgtcgcgtctcaaaacaacaccatatacgcttccctcacc
ggcttccgccgcatccagccccctcctcccgattctcctgaccagagaccaactgtggaa
gtaactggtcacaaagcccatggtcctgtaccggaacctggttcggttgtcattgcccga
gttactaaggtgatggctaggacagcttcagctgatattatgtgtgttggtccgaagtcc
gtgagagaaaaattcaccggaataattaggcaacaggatgttagagcaactgaaatggac
aaggtggatatgcattcgtcatttcatcctggtgatattgtcagagctgtggttttctct
tggagatgcgcgggcttattacctatcaacggctaa
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