Hibiscus syriacus (Rose-of-Sharon): 120162045
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Entry
120162045 CDS
T09559
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like isoform X1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120162045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120162045
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120162045
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rcd1
DUF2249
Motif
Other DBs
NCBI-GeneID:
120162045
NCBI-ProteinID:
XP_039028160
LinkDB
All DBs
Position
Unknown
AA seq
321 aa
AA seq
DB search
MLTVNLPQSPSMNSLFGGPSASNPTVAGAPAHKDRKMATAEHLVIDLSNPDLRENALLEL
SKNKELFQDLAPFVWNSFGTIAALIQETVSIYPVLSPPNLTPAQSNRVCNALALLQCVAS
HPDTRMLFLNAHMPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTE
IIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAE
QPSSRLLKHIIRCYLRLSDNPRAGDALRSCLPDMLRDASFSSCLREDQTTRRWLQQLLHN
VGVSRVPTLQAGAGFDHMLVN
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgctaacggtaaatctgcctcaatctccatcgatgaattcgctattcgggggacccagc
gcatcgaatccaactgtcgcaggagccccggcgcataaggatcggaaaatggcaacggcc
gagcatttagttatcgatctcagcaatcctgatctccgggagaacgctcttctcgaacta
tcgaagaacaaggaattatttcaagatttggctcctttcgtgtggaattcttttggtact
atagctgcactcattcaggagacagtctcaatttaccctgttctctcaccaccaaatctg
actccagctcagtcaaatcgagtttgtaatgctcttgctctacttcagtgtgtggcttct
catccggacacaaggatgttattcctaaatgctcatatgcccttgtatctgtatcctttc
cttaatacaacaagtaaatcaaggccttttgagtatttgaggcttactagcttaggtgtg
attggtgccttggtgaaggttgatgatacagaagttatcagcttccttctttcaactgag
ataatcccactatgtctgcgcacaatggagatgggcagtgaactatcaaaaacagttgcc
acttttatagttcagaagattctactggatgatgttggcttggactatatttgcactact
gcagagcggttttttgcagttggtcgagttctaggaaatatggttgcagcacttgctgag
caaccctcttcacgactgttaaaacatattattcgatgttatcttcgattgtcagataac
ccaagggctggcgatgcgttaagaagttgccttccggatatgttacgagatgcctccttt
agtagttgccttcgtgaagatcaaaccactaggaggtggctgcagcagttgcttcacaat
gttggggtgagtcgggtaccaactcttcaggccggtgcaggatttgatcacatgctggtt
aactga
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