Hibiscus syriacus (Rose-of-Sharon): 120163050
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Entry
120163050 CDS
T09559
Name
(RefSeq) nuclear exosome regulator NRDE2-like
KO
K26109
nuclear exosome regulator NRDE2
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120163050
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120163050
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
120163050
NCBI-ProteinID:
XP_039029004
LinkDB
All DBs
Position
Unknown
AA seq
1155 aa
AA seq
DB search
MVNMDGKGDAVDDQQDPNPSLFPLFPAAAVPASTVATTSSIPQWLSNPSFNADLSLINDA
VSSLSRPLNVEEEEEEEEEEKSKAGGEYPPFYELLEEEEEQEDSDGAKYDERKRKKRSKR
RSKKKTISKEIGDSLSKYKSKTSHSSDYYFDSHPDLDNLAYGSLYRMDVPRYKLRNPEQL
SGFMYRRTHRFSTYDKDADIDALDPKLKSAGRYWSPNNAALEHHKDLKRLRRYAPKNSSD
VVPSDFIPLSDIQSSPQRGEESSISNNSVIEESWEDEVLRKTREFNKLTREHPHDEKAWL
SFAEFQDKVASMQRQKGVRLQTLEKKISILEKATELNPDNEQILLCLMRAYQKRDNTDVL
IGRWENVLMLHSGSYMLWREFLHVVEGEFSRFKVSDMRKMYAHAIQALSATCNKQLRQIH
ETSKPADSAMVHLELGLVDIFISLCRLEWQTGHQELATALFQAEIEFTLFCPSLLLKEHS
KHRLFEHFWDSDGARVGEEGALGWSIWLEKEEENRQRVMKEESSDKNDEGGWTGWSEPLS
KCKEKSTSLENVAHDDAIAEDFHEKVENEDIEQEDDTEALLKQLGIDVDAGAGGEVKDTL
TWARWSEEESSRDSDQWMPVRAKSGAVADTHGLPNEEADEQFLREILYEDVCDYLFSLSS
NVARLSLVFQFIDFYGGKISSWVCTNSSSWTEKILSLEGIPDCIWQNMRRLLDDLNKLQS
KPGEFSLEFLLDSARGILQRTEMMKFLRNAVLLCLTAFPRNYILEEAALLAEELLVTRMN
SSSCSGAPSQSLAKRLLKCDRQDLLLCGIYARREAFYGNMDNARRVFDMALLSLAGFPMD
LQSNSSLLYLWYAEAELGNNRGSKLDSSSRAMHILSCLGSSMAYSPFKSHPSSLQLLKAR
QGFKEKLNTLRSKWMRGSVDDQSVALVCAAALFEELAAGWSAGIEIIDHVFTMVLPERRS
QSHHLEYLFNYYVGMLQRHHEQFTLSKAWESVTHGLQIYPSSPELFKALVEISCLYTTPN
KLRWMFDNHCHKRPSVVVWLFALIFEISRNGSPHRIHGLFERALANDKFHSSVVLWRLYV
AYEINVVHNPSAARRIFFRAIHACPWSKTLWLDGFLRLNSILTAKELSDLQEVMREKGLN
LRTDIYEILLQDEIL
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatatggatggaaagggcgacgcagtggacgaccaacaagacccaaatccctct
ctgtttcctctctttcctgctgccgctgtccccgcttctacagttgctactactagtagc
atcccccaatggctttccaaccctagcttcaacgccgacctttccctcatcaacgacgcc
gtttcctctctttctcgccccctcaacgtagaagaagaagaggaggaggaagaagaggaa
aaaagcaaagcaggcggagaatacccaccattttacgagctacttgaggaggaggaagaa
caagaagattctgatggagcgaagtacgacgagaggaaaaggaagaaaagaagtaagagg
aggagcaagaagaaaacgatttcgaaagaaattggtgattccttatccaaatacaaatcc
aaaacctctcattccagtgattattattttgattctcatccagatcttgataacttggcc
tacggctctctctacaggatggatgttccgcgctacaaacttagaaatcctgaacaatta
tctggatttatgtaccgtcggactcacagattttcaacatatgataaggatgctgatatt
gatgctttggatcctaagctaaagtctgctggtcgatactggtctcctaacaatgctgca
cttgaacaccataaggacttaaagcgtcttcgtcgttatgcccccaaaaattcttcagat
gtagttccttctgatttcattcctttgtctgatattcaatcatctcctcaacgtggtgaa
gaaagttcaatctcaaacaattcagtcattgaagaatcttgggaggatgaagtgctacgt
aaaacacgggaattcaacaaattgaccagggagcacccccatgatgaaaaagcatggcta
tccttcgcggagtttcaggacaaggttgcgagtatgcaacgacagaaaggtgttcgctta
caaactcttgagaagaagattagcatacttgagaaggcaactgaacttaatccagataac
gaacaaatcttgctttgtttaatgagggcctatcaaaaaagagataatactgatgtgctg
attgggagatgggaaaatgtgcttatgttgcattctgggagttatatgctgtggagagaa
ttcttgcatgttgttgaaggggagttctccaggtttaaagtttcagatatgagaaaaatg
tatgcacatgctatccaagctctatctgctacctgcaacaagcagcttagacagattcat
gaaactagtaaacccgcggattctgctatggttcatctagagcttggtctggttgatata
tttatttccctttgtaggcttgagtggcagactggtcaccaggaattggccactgcttta
tttcaagctgaaattgagtttactttgttttgtccttctctattattgaaagaacatagt
aaacatagactgtttgagcacttctgggatagtgatggtgcaagagttggagaagagggg
gctcttggttggtccatatggttggagaaggaagaagaaaataggcagcgagttatgaaa
gaagagagttcagataagaatgatgagggtggttggactggttggtcagaaccattatcg
aaatgtaaggaaaaaagcacaagtcttgaaaatgttgctcatgatgatgcaatagctgag
gatttccatgaaaaagttgagaacgaggatattgagcaagaagatgatacagaagcattg
ctgaaacagctaggcattgatgttgatgctggggccggtggtgaggttaaagataccttg
acttgggctaggtggtcagaagaagagtcctcaagagactctgatcaatggatgcctgtt
cgtgcaaaatctggtgcagttgctgatactcatggactgcccaatgaagaagcagacgag
caatttttgagagagatattatatgaagatgtatgcgactacttgttctcattgagctct
aacgttgctcgcttatctctagtattccaattcattgatttttatggtgggaaaatctcc
tcttgggtttgtaccaacagttccagttggactgagaaaattcttagcctggagggtata
ccagattgtatttggcaaaatatgagaaggttgttggatgatttaaataaattacagagt
aagcctggtgaattcagtttggaattccttttggatagtgccagaggcatccttcagagg
actgaaatgatgaaatttcttcgtaatgctgtgttactttgcttaactgcttttccccgt
aactatatattggaagaagccgctcttttggcggaagagctcttagtgacaagaatgaac
tcttctagctgttcaggtgctccgagtcaatctttagcaaaacgccttctcaaatgtgat
cggcaggatctcttgctttgtggaatttatgcacgtagggaggccttttatgggaatatg
gataatgccagaagagtttttgacatggcattgctgtcacttgctgggtttccaatggat
ctacagtctaattcatctcttctatatttgtggtacgctgaagccgagctcggaaacaat
cgtgggagtaaattggattcatcatcacgggcaatgcatattctctcctgcctaggtagt
agtatggcgtacagtccatttaaaagtcatccatcaagcttgcaattactgaaagcacgg
caggggttcaaagaaaaattaaacacattaagatcaaagtggatgcgtggttctgttgat
gatcagtcagttgccctagtttgtgcagcggctttgtttgaagagttggctgctggatgg
tctgcgggtattgaaattatagatcatgtttttacaatggtacttccagaaagaagaagc
caaagtcaccatctagaatatcttttcaactattatgttgggatgcttcagagacatcat
gagcaatttactttgtccaaagcttgggaatctgtcacacacgggctgcagatatatcca
tccagcccagaactctttaaagctttagtggagatcagctgtctttacacgactcctaat
aaattacggtggatgttcgacaaccactgtcacaagagaccatcagtagtagtttggctt
tttgcattaatatttgagataagtcggaatggctcgccgcataggatccatggattattt
gagagggcactagcaaacgataaatttcatagttcagttgtactttggcgattgtatgtt
gcgtacgagattaacgttgtccacaatccatctgctgcaaggcgaatattttttcgtgct
attcatgcttgtccttggtcaaaaacgctttggctggatggttttctgagattgaactcc
atcttaacggcgaaggagctgtcggaccttcaagaagtgatgagagaaaaggggttgaat
ctgaggactgatatttatgaaattcttttacaagatgagattctgtga
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