Hibiscus syriacus (Rose-of-Sharon): 120163320
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Entry
120163320 CDS
T09559
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120163320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120163320
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120163320
mRNA degradation factors
5'-3' decay
Decapping complex
120163320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
120163320
NCBI-ProteinID:
XP_039029221
LinkDB
All DBs
Position
Unknown
AA seq
752 aa
AA seq
DB search
MDRSDDNALFDASQYEFFGQNAMEEVVFGGLEDGEEETPIFASNEDDEYRLFDKGEVGGL
GSLSDMDDLASTFAKLNRVVAGPKNPGVIGDRSDSFSRESSSAIDWAQDGEFFNWMDQHV
FDTEDAQEGKRWSSQPLSTSVCFLDSKRLYRTSSYPQQQPEPLFMFDTEDVQEGKRWSSQ
PQPSSARFSGAKPLYRTSSYPDQQPEPHFSREPIVGPKSTFTSFPPPGSGCQQSLPGNLK
IPFLTTGSQSPFAAASLAPISTSSLHLAGLSHGLLLAVICPSQFPSFITQMMLGLADLRE
HRTKSSQRNRQSMRFSQQSSDTGSQKSESGLVEFGSKYMTGEEIESILKIQHAATHSNNP
YVDDYYHQACLAKRSSASRAKHHFYPSRKKESHSRSRNSGEQHLHLNVDALGKVSLSSLC
RLRPLLEVGPPLGSGDASDQKTERPLEQEPMLAVRIIIEDGFSLLLELDDIDRLIQFSQP
HDGGAQLICRRQILLEGMAASLQLVDPLSKGVRAVSCAPKDDIVFLRLVSLAKGRKLITR
FLQLLIPGSELMRIACMTIFRHLRFLFGGLSSDLGATKTTNDLAKTVSMCVNGMDLHAVS
ACLVAVVCSTKQPPLRALGSSAGDGASVILKSVLERATKLLSHPSGNCSMPNFAFWRASF
DEFFTLLTKYCATKYETIIQSIRNQFQSSTEVIGSEAIRCEMPCELLRASLPHTNESQRK
LLMDFSQQSVPMNGSNLPAVSTSQINSELVRG
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggacagatccgacgataacgcgctttttgatgcttcccagtatgaattttttggtcaa
aatgctatggaagaagtggtgtttggaggtctggaagatggtgaagaggaaactcctata
tttgcatccaatgaagacgatgagtaccgtttgtttgataagggagaggttggaggttta
gggtcattatctgacatggatgatctggctagtacttttgcaaagttgaatagggttgtc
gcgggaccaaaaaatccaggagttattggtgatagatctgattctttttcaagggaaagt
tcttctgctattgactgggctcaagatggagagtttttcaactggatggatcagcatgtg
tttgatacagaagatgctcaagaaggcaagagatggtcctcacaaccactatcaacctct
gtttgttttttagactcaaagcgtttgtatagaacttcatcatatccccagcagcaacca
gagcctctcttcatgtttgatactgaagatgttcaagaaggcaagagatggtcttctcag
ccacaaccatcttctgctcgtttttcaggagcaaagcctttgtatagaacttcatcatat
cctgaccagcaaccagagcctcacttctcaagagaaccaattgtgggacccaaatcaacc
ttcacatctttccctcctcctggtagtggatgccaacaatctttgcctggcaacctaaaa
attccttttcttactactggatctcagtcacccttcgctgcagcaagccttgctccaatt
tccacatccagtcttcatctggctggtctatctcacggattacttttggcggtaatttgt
cccagtcaattcccatccttcatcacacaaatgatgcttggactggctgatcttagggaa
catcgaactaaatcatcacaaagaaacaggcaaagcatgcgtttttctcagcaaagttct
gatactggtagccagaaaagtgagagtgggttggtggaattcggatccaagtatatgact
ggtgaagagatagagagcattctcaagatacagcatgctgccacacatagtaataatcct
tatgtggatgattattaccaccaagcttgtcttgccaaaagatcttctgcttccagggct
aaacatcatttttacccatctcgtaagaaggaatcacattctcgatcccgtaacagtgga
gagcagcatttgcatctcaatgtggatgctcttgggaaggtctctctctcttccctttgt
agactgcgtcctctacttgaagtcggtcctcccttaggttcaggtgatgcttctgatcag
aaaactgagaggcctctagagcaggagcctatgcttgcagttagaatcattattgaggat
ggtttcagtcttcttcttgaactagatgacattgaccggctcatacaatttagtcaaccc
catgatggtggggctcagctcatatgtaggcggcagatcctgcttgagggcatggcagca
tcacttcagcttgtggatccacttagcaaaggtgtgcgtgcagttagctgtgctcccaaa
gatgacatcgtgttcctaagattagtctccctagcaaaaggccggaagcttatcactagg
ttccttcagcttctcatccctgggagtgagcttatgcgaatagcatgcatgaccattttt
cgtcacttgagattcttgtttggtggtctttcttcggatctgggagcaaccaagacaact
aatgatcttgcaaagactgtttccatgtgtgttaatggaatggatcttcatgcggttagt
gcatgccttgttgcagttgtttgttctacgaagcagcctccacttagggcccttggaagc
tcagctggggatggtgcttctgttattctaaaatcagttcttgaaagggccactaaactt
ctaagtcatccttctggaaattgcagcatgcctaattttgccttctggagggcttcattt
gatgaatttttcacccttctgaccaagtattgtgcgactaaatatgagacaataatccaa
tcaatacgaaatcagtttcagtcatccacagaagtcattggttcagaggctataaggtgt
gaaatgccctgtgaacttctacgagctagtcttcctcacacaaatgagtctcagaggaag
cttttgatggacttttctcagcaatctgtgcccatgaatggatccaatttgcctgctgtg
agtactagccaaatcaactccgagttggtaaggggctag
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