Hibiscus syriacus (Rose-of-Sharon): 120165020
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Entry
120165020 CDS
T09559
Name
(RefSeq) cleavage stimulation factor subunit 50-like
KO
K14406
cleavage stimulation factor subunit 1
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120165020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120165020
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
120165020
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_NWD2_C
Beta-prop_Aladin
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Cytochrom_D1
Beta-prop_NOL10_N
Ge1_WD40
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_IFT140_1st
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
120165020
NCBI-ProteinID:
XP_039030550
LinkDB
All DBs
Position
Unknown
AA seq
436 aa
AA seq
DB search
MEGNNLEKTLQEGNLYRQLNCLIVAHLRHHNLTQAARAVASATMTPLDVEAPPNKLLELV
VKGLAVENDETLQGVPSSTLFDLGTALGYGSNPNPRLSSVDFSAAQDTKGSTKSFPRHEI
RHLSEHKNIARCARFSTDGKFVATGSADTSIKLFEISKIKQMMLPDSKDGPVRPVIRTFY
DHVQPINDLDFHPQSTVLISGAKDNTIKFFDFSKATAKRAFRVIQDTHNVRSVSFHPSGD
FLIAGTDHPIPHLYDVNTFQCYLSANPPEIGVNGAINQVRYSSTGGMYVTASKDGVIRLW
DGVSASCMRSIVGAHGTAEATSACFTKDQRFVLSCGKDSSVKLWDIGTGRLVKQYLGATH
TQLRFQAVFNDTEEFVLSIDEPSNEIIIWDALTAEIVAKWPSNHVGTPRWIEHSPTEPAF
ISCGTDRSVRFWKETL
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcaataacttggagaaaacactccaagaagggaacctttacaggcaactcaat
tgcctcattgttgctcatcttcgccatcacaatctcacccaagctgcaagagcagtggct
tcagcaacaatgacgcctttagacgttgaagctcctcccaataagcttctcgaacttgtt
gtcaagggtctggcagtggagaatgatgaaacattacaaggggttccttcttctactttg
tttgatttggggacagcgctgggttatggctcaaatccgaatcctcggcttagttctgtt
gatttcagtgctgcacaggatactaaaggctcgacaaagagttttccaaggcacgagata
aggcatctttcagagcacaagaatattgccaggtgcgcaaggtttagtaccgatgggaag
tttgttgctaccggaagtgccgacacatcaattaaactctttgaaatatcaaaaataaag
caaatgatgctgcctgattcaaaagatggtccggtgcgacctgttataaggacattttat
gaccatgtgcagccaataaatgatttggatttccatcctcagagtaccgtgctaatatcc
ggtgcaaaagataacactataaaattctttgatttttccaaagctaccgcaaagagagcc
ttcagagtgatccaggatactcacaatgtacggtctgtatctttccatccatctggtgat
tttctaatagcgggaaccgatcatccaataccacacttatacgatgttaatacattccaa
tgttatctatctgcaaacccccctgagataggcgtaaatggagcaataaaccaggtaaga
tattcttctaccggtggcatgtatgttactgcatctaaagatggtgtcattcggttatgg
gatggagtaagtgccagttgtatgcgctccatagttggtgcccatggaacggcagaggcc
acgagtgcatgttttacaaaggatcaaaggtttgtcctttcttgtggaaaggattcctcg
gtgaagctttgggacattgggaccggaagattggtcaagcaatatcttggggctactcac
acgcaattgcggttccaggccgtttttaatgataccgaagagtttgtgctatccatagat
gaacctagcaatgagatcatcatatgggatgctttgacggctgaaatagtggcaaagtgg
ccttccaaccatgttggcacccctcgttggatcgagcactcaccaacggagcctgctttc
atatcatgtgggaccgacagatctgttcggttttggaaggaaactctctaa
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