KEGG   Hibiscus syriacus (Rose-of-Sharon): 120167382
Entry
120167382         CDS       T09559                                 
Name
(RefSeq) protein transport protein SEC13 homolog B-like
  KO
K14004  protein transport protein SEC13
Organism
hsyr  Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03013  Nucleocytoplasmic transport
hsyr04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:hsyr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120167382
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120167382
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsyr03019]
    120167382
   04131 Membrane trafficking [BR:hsyr04131]
    120167382
Messenger RNA biogenesis [BR:hsyr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     120167382
Membrane trafficking [BR:hsyr04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    120167382
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    120167382
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    120167382
SSDB
Motif
Pfam: Beta-prop_IFT122_1st Beta-prop_THOC3 WD40 Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR35_TULP_N WD40_Gbeta Beta-prop_RIG_2nd Beta-prop_WDR3_2nd Beta-prop_IFT140_1st ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_WDR19_1st WDR55 WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_NOL10_N Beta-prop_HPS5 DSE1_N Beta-prop_WDR90_POC16_2nd
Other DBs
NCBI-GeneID: 120167382
NCBI-ProteinID: XP_039032345
LinkDB
Position
Unknown
AA seq 268 aa
MIKIVGVSNNTHQHLATLTGHQGPVWQVAWAHPKFGSLLASCCYDGRVIIWKEGNQNEWS
QAHMFDEHKSSVNLIAWAPHELGLCLACGSSDGNISVFTSRADGGWDVSRIDQAHPVGVT
SVSWAPSTAPGALVGSGLLDPVQKLCSGGCDNTVKVWKLYNGTWKMDCFPALQMHTDWVR
DVAWAPNLGLPKSTIASASQDGKVIIWTVAKEGDQWEGKVLHDFGTPVWRVSWSLTGNIL
AVADGNNNVTLWKEAVDGEWQQVTVVEP
NT seq 807 nt   +upstreamnt  +downstreamnt
atgattaagatagttggggtgagcaacaatacacaccagcatttagcaactctgacaggt
caccaaggaccagtatggcaggtggcttgggctcatccaaagtttggctctttacttgct
tcttgttgttatgatgggcgtgtgattatttggaaggaaggcaatcagaatgaatggagt
caggctcatatgtttgatgagcataagtcatctgttaatttaatcgcttgggcccctcat
gaattgggactttgtttggcatgcggttcttccgatggaaatatatcggttttcacctct
agggcagacggaggctgggatgtatcaaggattgatcaggctcacccggttggtgtaaca
tctgtttcatgggctccatcgacagcacccggtgctctagttggttctggcttgctggac
cctgttcagaaactttgctctggtggatgtgataacactgtaaaagtgtggaagctctac
aatggaacctggaagatggattgctttccagctcttcaaatgcatactgattgggtacgg
gatgtcgcttgggcacccaatctggggctaccgaaatctaccatcgcaagcgcgtcccag
gacgggaaagtaattatatggacagtggccaaggaaggggatcagtgggaaggtaaagta
ttgcatgatttcggtaccccggtgtggagggtgtcatggtcattgaccggaaacatattg
gctgtggctgatgggaacaacaatgtgacattgtggaaagaagctgtagatggggagtgg
caacaggtgactgttgttgagccataa

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