Hibiscus syriacus (Rose-of-Sharon): 120169494
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Entry
120169494 CDS
T09559
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120169494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120169494
03009 Ribosome biogenesis [BR:
hsyr03009
]
120169494
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120169494
Spliceosome [BR:
hsyr03041
]
Complex A
U1 snRNP components
U1 related factors
120169494
Complex B
120169494
Ribosome biogenesis [BR:
hsyr03009
]
Eukaryotic type
Pre-60S particles
Helicases
120169494
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
120169494
NCBI-ProteinID:
XP_039033553
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRYDSRSGDPNSYRDRRSDSGLGGASAYGGSVRSVSSRRDYDTAEPPRKFDLDGLTPFE
KNFYVESPSVAVMSEKDVEEYRQRREITVEGRDVPKPVKSFADVGFPDYVQQEITKAGFV
EPTAIQAQGWPMALKGRNLIGIAETGSGKTIAYLLPAIVHVNAQPILAPGDGPIVLVLAP
TRELAVQIQQEAAKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLDSH
HTNLRRVTYLVLDEADRMLDMGFEPQIQKIVAQIRPDRQTLYWSATWPKEVEQLARQFLY
NPYKVIIGSADLKANHAIRQHIVIVSESQRYFRLVKLLEDIMDGSRILIFMDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSSIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKDLIAILNEAGQKVSPELAAMGRG
ALPPPSGHGGFRDRGKGYGGGLPCN
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatatgatagccgctccggcgatcccaactcctaccgtgaccgtcgaagtgac
tcagggcttggtggggcttcagcatacggtggttcagtgcggtccgtgtcaagcagaagg
gactatgataccgctgaaccacctaggaagtttgatttggatgggttgactccttttgaa
aagaatttttatgttgaatccccttcggtggcagtaatgtcagagaaggatgtggaggag
tataggcagcggagggaaattacggttgaaggtcgtgatgttccaaagcctgtgaagagt
ttcgcagatgtgggatttccagactatgtacagcaagaaattacaaaagcagggtttgtt
gaaccaacagccatccaagctcaaggctggccaatggctttgaagggccgtaatctcatt
ggcattgctgaaactggatcagggaagactattgcctatttattgcctgcaattgttcat
gtaaatgcgcaaccaattttagctcctggagatggtccaattgtattagtattagcccca
acacgggaacttgcggttcagatacaacaagaggctgctaagtttggtgcatcatcaagg
atcaagaatacatgcatatatggcggggttccaaagggacctcaagtgcgtgatctccag
aaaggtgttgagattgttattgctacaccaggaaggcttatagatatgttggactcacat
cacacaaatttgcgaagggttacttatttagtcttggatgaggcagatcggatgttagat
atggggtttgagcctcagatacaaaaaattgttgcccagatccgtcctgatcggcaaact
ttatactggagtgcaacatggccaaaggaggttgaacaattggcaaggcagtttctttat
aatccatacaaagtgataattggatctgcagatttaaaagctaaccatgcaattcgccaa
catattgtcattgtttcggagagtcaaaggtatttcagattagtgaagttgctggaggat
atcatggatggaagcagaattttgattttcatggataccaagaaaggttgtgaccagatc
accaggcaacttcgcatggatggttggcctgctctctcaattcatggagacaaaagtcaa
gctgaaagggactgggttctttctgagtttaaagctggcaagagctctataatgaccgca
acagatgttgcggctcgtggcttagatgtgaaagatgtgaaatacgtaatcaattatgac
ttcccgggatctctcgaggattatgtccatcgcattggtcgaacaggaagggcaggggca
aaaggaactgcctacactttcttcacagctgcaaatgccagatttgcaaaagaccttatt
gccatacttaatgaagcgggacaaaaggtaagtcctgaattggcggcaatgggacgtggt
gcgcttcctcctccgtcaggtcatggtggttttcgagaccgaggtaagggttatggtggc
ggactcccttgtaactaa
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