Hibiscus syriacus (Rose-of-Sharon): 120169546
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Entry
120169546 CDS
T09559
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120169546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120169546
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120169546
Spliceosome [BR:
hsyr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120169546
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
AAA_22
DEAD
WHD_HA2
AAA_19
nSTAND3
AAA_30
Flavi_DEAD
T2SSE
ABC_tran
NB-ARC
AAA_7
Cas3-like_C_2
Plavaka
TsaE
nSTAND_NTPase5
AAA_16
AAA_29
RNA_pol_Rpb1_6
AAA_23
Motif
Other DBs
NCBI-GeneID:
120169546
NCBI-ProteinID:
XP_039033596
LinkDB
All DBs
Position
Unknown
AA seq
883 aa
AA seq
DB search
MEPKLSRKDEEEALRRSRALERDDINSLRKASRQQYLKKREQKKLEELRDGIEDEKYLFE
GVKLTKAEYGELRYKKEVYELVKKRTEEDDNIGEYKMPEAYGQDGVVDQEKRLSAALQCC
RDPTAGDKMNPFTEQEAWEDHQIGKATLRFGSRNKKQMNDDYQFVFEDQIEFIKTSMMDD
EFDNKISLDPPEKSKAKSELEKLQEERKDLPIYPYRDDLLKVVEENQVVVIVGDTGSGKT
TQIPQYLNEAGYTKRGKVGCTQPRRVAAMSVAARVCQEMGVRLGSEVGYTIRFEDCTSRK
TLLKYMTDGALLRELLVEPDLASYSVIMVDEAHERTVSTDILFGFVKDIARSRKDIKLLI
SSATLDAEKFSDFFDSAPIFRIPGRMYPVEIHYTKAPQADYVDAAIVTALQIHVTRPPGD
ILVFLTGQEEIETTEEILKHRVRGFGTKVADLIICPIFANLPTELQSKIFKPTPAGARKI
VLATNIAEASLTIDGIKYVIDPGFCKMKSYNPRTGMESLIVTPISKASAKQRAGRSGRTS
PGKCFRLYTEFNYTNLDDNTMPEILWTNLASVVLSLKSLGVHDLHNFDFMDSPTVQALIK
AADLLSALHALNKVAELTLVGRRMAEFPLDPMLSKMIVASDKYKCSDDVVSIAAMLSVGN
SIFYRPKDKQVHADNARKNFHTGNVGDLIALMNFYNAWRETNYSTQWCYENYIQARSMKR
ARDIRDQLEGILERVGIELTCGANDLEAIKKCITAGFFPNSARLHKFGSYRTIKCRQTAY
IHPSSGLAEELPRWVVYHELVLTTKEYMRNVTELKPEWLVEISPHYYQMKDFKDAASKKM
PKGQRDGVIPSGLLVVNFEACNNLRMNIFKRNQNFLDCYKLRC
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggagccaaagctttctcgaaaggacgaagaggaggccttacgaagatctagagccttg
gagcgagatgacattaatagtttgaggaaagcttcaaggcaacagtatttgaaaaagagg
gagcaaaagaaactcgaggagctcagggacggtatagaagatgagaagtacctttttgaa
ggtgtaaagctcaccaaagcagaatatggtgagttaaggtacaagaaggaagtatatgag
cttgtgaagaagcggacagaagaggatgataatattggggagtacaaaatgccagaagct
tatggtcaagatggggttgttgaccaggagaagagactttctgcggcccttcagtgttgc
agagaccctactgctggggacaaaatgaatccatttacagagcaagaggcatgggaagac
catcaaattggcaaggccacattgagatttggctcaagaaataaaaaacaaatgaatgat
gactaccagtttgtgtttgaggaccagattgagtttattaagacgtcgatgatggatgac
gagtttgataataagatatcacttgacccacccgagaaatccaaggcaaaatctgaattg
gagaaactacaagaggaacggaaagatttgccaatttatccatatcgagatgatctactt
aaagttgttgaggaaaaccaggttgttgttatcgtaggagacactggatcagggaagacc
acacagataccacaatatcttaacgaagctggttacacaaaacgtgggaaggttggttgt
acacagcctcgacgtgttgctgctatgagtgttgctgctcgagtttgtcaagaaatgggt
gtcagacttggcagtgaggtgggctatactattcgttttgaagattgcacttcaagaaag
actctattgaaatatatgacagatggtgcattgttgcgagaattgcttgttgaacctgat
cttgctagctacagtgtgataatggtggatgaagctcatgaaagaactgtttcaactgat
attcttttcggatttgtgaaggatattgcacgatctagaaaagatatcaaattacttatc
tcaagtgcaacgcttgatgcggagaagttcagtgatttttttgattctgctccaattttc
agaattcctgggagaatgtaccctgttgagatacactacacaaaagcaccacaagccgat
tacgtggatgctgcaattgttactgcacttcaaatccatgtgactcggccaccgggagat
attttggtttttctcactggtcaagaagaaattgagacaacagaagaaattttgaagcat
agggtaagaggctttgggacaaaagttgcggaccttattatttgcccaatatttgcgaat
cttcctactgagcttcaatccaaaatatttaaacccactcctgctggtgcacgcaagata
gtcctagcaacaaatattgctgaagcatcattaaccatcgatggcattaagtatgtcatt
gatccaggtttctgcaagatgaaatcttataatccgaggactgggatggagtctttgata
gtaactcctatctctaaagcttcagctaagcaacgtgcaggtcggtctgggcgaacaagt
ccaggtaagtgttttcgattgtacactgaattcaattatacaaatcttgatgacaatacc
atgccggagatactatggactaaccttgccagtgttgttctctctttgaagagtcttgga
gttcatgatttgcataattttgattttatggattcaccaacagttcaggctctaataaaa
gcagctgaccttctgtctgcattgcatgcattaaataaagttgcagagctgactttagtt
ggtagacgaatggcagagttccctcttgatccaatgctatccaaaatgatagttgcttcc
gataagtataagtgttcagatgatgttgtttccattgctgctatgctctctgtaggcaat
tctatcttttaccgtccaaaggacaagcaagttcatgctgataatgcaaggaagaatttt
catactggcaatgtgggtgatcttattgctttaatgaatttttacaatgcatggagggaa
acaaattactcaacacagtggtgttatgaaaattatattcaagccaggagcatgaaacgt
gcgagagacatcagggatcaattagagggtattctggagagagttggaattgaactaacc
tgcggtgctaatgatttagaggctataaagaaatgcattacagctggatttttccctaat
tcggctaggttgcataaatttggttcttatcggactataaagtgtcgacaaactgcctat
atacatccaagctcaggcttggcagaggagctcccgagatgggtggtataccatgaactg
gttcttaccaccaaggaatatatgagaaatgtaactgagctgaaaccggaatggttggtc
gaaatatccccacattactaccagatgaaggactttaaagatgcagcatcaaagaaaatg
ccgaagggccaaagggacggtgttattccatctggacttctcgtcgttaactttgaagca
tgcaacaatcttaggatgaatattttcaagcgcaatcaaaacttcctcgactgttacaaa
cttaggtgctga
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