Hibiscus syriacus (Rose-of-Sharon): 120170469
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Entry
120170469 CDS
T09559
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120170469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120170469
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120170469
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120170469
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
zf-C2H2_CASZ1_1
Motif
Other DBs
NCBI-GeneID:
120170469
NCBI-ProteinID:
XP_039034343
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MSGLFNSSIDGSASNLPDSSGRSFATSFSGQSGAASPVFHHSGSIQGLHSIHGSFNVPNL
PGTLASRNSMLSNVPTGGVQQPTASLSGGRFASNNLPTALSQLSHGNSHGHSGVTNRGGI
SVVGNPGFSSNTNGVGGSIPGIHPTSASIGNRNSVPGLGVSQILGNAGPRITSTMGNMVG
GGNIGRNISSGGGLSVPGLASRLNLSTNSGSGSLTMQGQNRLMSGVLPQGSPQVISMLGN
SYPTVGGPLSQSHVQAVNNLSSMGMLNDVNSNDNSPFDINNDFPQLTSRPNSAGGPQGQL
GSLRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNADYAIDLHQKEQLHDNTMSMMQSQH
FSIGRSAGFNLGGSYSSHRPQQQHAPSASGSGVSFPPINNQDLLHLHGSDIFPSSHSSYH
SQANGPPGVGLRPLNSTTTVSGMGYDQLIQQYQQHQNPSQFRLQQISTVNQSFREPGMKS
MQAAQSNPDPFGLLGLLSVIKMTDPDLTSLALGIDLTTLGLNLNSSENLHKTFRSPWSDE
PAKGDPEFTVPQCYYAKQPPPLHQGYFSKFTVDTLFYIFYSMPKDEAQLYSANELYNRGW
FYHKEHRAWFIRVPNVEPLVKTNTYERGSYHCFDPKSFETIRKDNFVVHYEMLEKRPALP
QH
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggattatttaattcatctatcgacgggtcagcatctaatcttccggacagtagc
ggacgctcttttgcaacatctttctctggccagtctggtgctgcctcccctgttttccat
cacagtggttctattcagggactacatagtattcatggtagctttaatgttcccaacctg
cctggtacactcgcatcaagaaactcaatgttaagtaatgttccaactggtggggttcaa
caacctactgcgagcctttcaggcggaagattcgcatcaaataatctcccaactgcactt
tctcagttatctcatggcaactcccatggtcattcaggagtaaccaatagaggaggtatt
agtgttgtcggaaaccctggattcagtagtaacacaaatggagttggtggttcaattcct
ggcattcaccccacctctgcatcaattggtaaccgcaattctgttccgggattgggagta
tcccaaattttgggaaatgcaggtcctaggataacgagtactatgggaaacatggttggt
gggggaaacattgggaggaacattagttctgggggaggattatctgtacctggtcttgca
tctcgtctgaatttaagtaccaatagcggatctggaagtttaacaatgcagggacagaat
cggttgatgagtggtgtgcttcctcagggatctcctcaggtaatttcaatgttaggtaat
tcttatccgactgttgggggtccactttcccagagccatgttcaagctgtgaacaatctt
agctctatgggaatgttgaatgatgtgaactcaaatgacaattccccttttgacataaat
aatgatttccctcagttgacaagtcgtcctaattctgctggagggcctcaaggacaattg
ggttcattacggaaacaaggtcttagtcccattgttcaacaaaaccaagagttcagcatt
caaaatgaagatttccctgctttaccaggatttaaaggtggtaatgctgattatgcaata
gatttgcaccagaaagaacaacttcatgacaataccatgtctatgatgcaatctcagcac
ttctctattgggagatcggcaggatttaacttgggtggatcatattcatctcatcggcca
cagcagcaacatgctccatcagccagtggtagcggggtatcctttccacctataaacaac
caagatcttctccatttacatggctcagatattttcccttcatcacactcgagctaccac
tcacaggctaatggaccacctggagttggattaagacctttaaattccacaactactgtt
tctggaatgggttatgatcagctcatccagcaatatcagcaacatcagaacccttcccag
ttccgtcttcaacagatatcaactgtcaatcaatcatttagggaaccaggcatgaagtca
atgcaggctgcacagtctaatccagatccatttggtttactcggtttgctaagtgtaata
aagatgactgatcctgatttaacttcccttgctctcggaattgatctgactacacttggc
ttaaacttaaattcatctgaaaatcttcacaagacttttcgttctccgtggtctgatgaa
ccagctaagggtgacccagagttcactgtgccacaatgttattacgccaagcaaccaccc
ccattacatcaaggctatttttcaaaattcactgtggacacattgttctatatattttac
agcatgcctaaagatgaagctcaactatattctgcaaatgaactttataatagaggctgg
ttttaccacaaagagcaccgagcatggttcataagagtccccaatgttgagccactggtt
aagacaaacacatacgagagaggttcttatcactgttttgacccaaagtcattcgaaaca
atccgcaaggacaattttgttgttcattacgagatgttggaaaagagaccagctttacct
caacattaa
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