Hibiscus syriacus (Rose-of-Sharon): 120170775
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Entry
120170775 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120170775
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120170775
Spliceosome [BR:
hsyr03041
]
Complex C
Other components
Complex C specific factors
120170775
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
AAA_30
ResIII
AAA_7
T2SSE
Cas3-like_C_2
AAA_11
AAA_16
nSTAND3
TrwB_AAD_bind
AAA_29
Motif
Other DBs
NCBI-GeneID:
120170775
NCBI-ProteinID:
XP_039034573
LinkDB
All DBs
Position
Unknown
AA seq
535 aa
AA seq
DB search
MSQFWKPGTEKPRLLEDEDGGVVFLSSSFSSSSSGYGYASIEKQRQRLPVYKYRTAILYL
VEAHATTIVVGETGSGKTTQIPQFLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV
KLGEEVGYTIRFEDISNSDLTRIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTD
ILLGLLKKIQKRRPELRLVISSATIEAKSMSNFFLSSKRRQALEGEELRPSLEPAILSVE
GRGFNVQIHYVEDPVKDYVLAVVSTVLLIHDKEPPGDILVFLTGQDDIDAAIKLLTEEAR
GNGKTSSGLTILPLYSGLTRAEQDLVFSPTPKGKRKVVISTNIAETSLTLEGIVYVIDSG
FSKQRFYNPITDIENLVVAPISKASAKQRAGRAGRIRPGKCYRLYTEEYYLNEMSVQGIP
EIQRSNSVSCVIQLKALGIDNILGFDWPASPSPESMIRALEVLYSLGVLDDDAKLTSPVG
FQVAEIPLEPMVAKMIISSNELGCSYEIITIAAVLSIQSIWFLVGEQKRNWMKPS
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagttctggaaaccaggaaccgagaagccgcgcctccttgaggacgaggacggc
ggcgttgttttcttgtcatcttccttctcttcatcttcgtctggttacgggtatgcgagc
attgagaagcaaagacagaggcttccagtttacaagtatagaactgctattctttactta
gtggaagctcacgctactaccattgttgttggtgagactggcagtggtaaaaccactcaa
atcccacagtttctaaaagaagctggttgggctgatggtgggcgtgttatagcttgcacg
caaccaaggcgactagctgtgcaggcagttgcttctagggtggctgaggagatgggggtc
aaacttggagaagaagtcggttacactattcggtttgaagatatctctaattcggatctt
actaggataaagtttctcacagatggagttttacttagagaaatgatggatgatcctctt
ttgactaagtacagtgtcattatggtggatgaggcgcatgaaagatccatttcaacagac
attttacttggccttctgaaaaagattcaaaaacgtcgacctgagctgcgtttggttatt
tcttctgctacaatcgaagcgaagtcaatgtctaatttcttcctgtctagtaaaaggcgc
caagcattagaaggtgaggagcttagacctagcttggagcctgcaatcctatccgttgag
ggcagagggtttaatgtgcaaattcattatgtggaagaccctgtaaaagattatgttctg
gctgttgtttcaacagtgctattgatccatgacaaggaaccaccaggtgatattttagta
tttcttactggtcaagatgatattgatgctgctattaagttgctcactgaagaagctcga
gggaatgggaaaacttcctcagggttgactattctgcctctgtactcgggacttacgcgt
gcagaacaggatttggtgttttctccaactcctaaaggaaagagaaaagtagtgatatca
acaaatatagcagagacatcattgactttagagggtattgtctatgttatcgacagtggc
ttctcaaaacaacgattctacaatccgatcacagatatagaaaaccttgtagtggcaccc
atatccaaggcatctgctaaacaaagggctggtagggccggtagaattagacctgggaag
tgttacagactctatacggaagagtattatctcaatgaaatgtctgttcaaggaattcca
gaaatccaaaggtcaaattccgtttcctgtgtgattcagctaaaagcattaggcattgat
aacattctgggctttgattggccagcatctccatctcctgaatcaatgatccgagcactt
gaagtactttattcacttggtgtccttgacgatgatgccaaacttacttcacctgttggt
ttccaagttgcagagattccactggaaccaatggttgcaaaaatgataatatcttcaaat
gagcttgggtgttcatatgaaattattaccatcgctgctgttctctctatccagtcgatc
tggtttctagtcggggagcaaaaaaggaattggatgaagccaagttga
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