Hibiscus syriacus (Rose-of-Sharon): 120171561
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Entry
120171561 CDS
T09559
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120171561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120171561
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
120171561
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
120171561
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Spore_YtfJ
Motif
Other DBs
NCBI-GeneID:
120171561
NCBI-ProteinID:
XP_039035174
LinkDB
All DBs
Position
Unknown
AA seq
266 aa
AA seq
DB search
MVGLSVGEKHFIQGGISQDLRLDCRKRLTYRPIYVETGIIPQAHGSARVRLGATDVIASV
KAELGKPNALQPDKGKIAIFVDCSPTAAPMFEGRGGEELSTELSVALERCILGGKSGAGA
GIDPTSLVVVEGKVCWDLYVDGLVISSDGNLLDALAAAIKAALSNTGIPKVDVAAEMTGD
EQPEVNISDEEFLQFDTSGIPVIVTLTKVGKQYIVDATSEEESQMTSAVSVSVNRKGHVC
GLTKRGGAGLDLSIILDMISVAKHVK
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atggtgggactttctgttggagaaaaacatttcatacaaggtggaatttcccaagacctt
cgtttagattgtagaaaaaggttaacctaccgacccatatatgttgaaactggaattatt
ccacaggcacatggttccgcaagagttaggcttggtgcaactgatgttattgctagtgtc
aaggctgaacttggaaaaccaaatgcattgcaacctgacaaaggaaagattgctatattt
gttgattgtagtccaactgcagcaccaatgttcgagggtagagggggtgaggaattgtca
acagagctctcagttgctctggaacggtgcatcttgggtggtaaaagtggagcaggagct
ggaattgatcctacatctctggtagttgtggaaggaaaagtgtgttgggatctctatgtt
gatggtcttgttattagttcagatgggaatttgctagatgcccttgctgctgccattaag
gctgctttaagcaatactggcatcccgaaggtcgatgttgcagccgagatgacaggtgat
gaacaacccgaagtcaacattagtgatgaagagttcctacagtttgacacatccggaatt
cccgtcatagttacactaacaaaggtggggaagcaatatattgttgatgctacatcagaa
gaggaatcacaaatgacctcagctgtctcagtttctgttaacaggaaagggcatgtttgt
gggcttacgaaacggggcggtgcgggcctagatctgagtatcattcttgacatgatatct
gtagcaaaacatgttaagtga
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integrated database retrieval system
