Hibiscus syriacus (Rose-of-Sharon): 120171932
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Entry
120171932 CDS
T09559
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120171932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120171932
03012 Translation factors [BR:
hsyr03012
]
120171932
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120171932
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120171932
Translation factors [BR:
hsyr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120171932
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
TFIIA
AAA_22
AAA_19
nSTAND3
ATPase
NACHT
Dicer_dimer
T2SSE
PAP_RNA-bind
ABC_tran
RCR
Motif
Other DBs
NCBI-GeneID:
120171932
NCBI-ProteinID:
XP_039035466
LinkDB
All DBs
Position
Unknown
AA seq
1237 aa
AA seq
DB search
MPSSYSPHLLLFPSQFLTQTLKPSLSFPTMKDRPPSSSGAVYIPPHHRLGPHMSSPNNHK
ATKKGADLSASASTIHSKLSDRQNKPVLNAKGTALPPPSLHLQQQQQQQQQQQQQQQQQQ
QGTYNSNYGSKNSNNQNPQYNSAYYLGIPENGSDHQLDLPLQSGSFNEANLEEWKRKLAI
LLHDDGKQELVSREKKDRRDFEQIAALAGRMGLYSHLYSKVAVFSKVPLPNYRFDLDDKR
PQREVNLNFGLLKRVDAYLGEYLSKKCRNNESFLDNCFSRSSSNSSIITEEGFFEQPEPL
ASGTAVMEKILLRRSLLLRDQQQAWQESPEGKGMLDFRQSLPAYKEKDTILTAILQNQVV
IISGETGCGKTTQLPQFILESEIDSGRGAFCSIICTQPRRISAISVSERVASERGEKLGE
SVGYKVRLEGIKGRDTRLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIV
LKDLLPRRPELKLILMSATLDAELFSSYFGGAPLIHIPGFTYPVQTHFLENILEMTGYRL
TPANQIDDYGEERMWKMSKQAPRKRKSQIASSVEDALRAADFKDFSPQTQESLSCWNPDC
IGFNLIEYLLSYICENERPGAVLVFMTGWDDISSLKEKLQAHAILGHPSRVLLLTCHGSM
ASSEQKLIFEEPEDGVRKIVLTTNIAETSITINDVAFVLDCGKAKETSYDALNNTPCLQS
SWISKVSALQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKILKL
GSISEFLSRALQSPKLLAVQNAIEYLKIIGALDVNENLTVLGRYLTMLPMEPKLGKMLIL
GAILNCLDPVLTIVAGLSVRDPFLTPLDKKDLAEAAKSQFSHDYSDHLALVRAYEGWKEA
EIDLTGYDYCWKNFLSAQSMKAIDSLREEFLSLLKDTGLIDDNATSFNCWSYDQHLIRSI
ICYGLYPGICSVVHNEKSFSLKTMEDGPVLLYSNSVNARESRIPYPWLAFNEKIKVNSVF
LRDSTAVSDSVLLLFGGSISRGDVRFSPDGHLKMLGGYLEFFMQPSLAEKYLSLRREFDE
LIQNKLLNPQMVLHIHHELISAIRLLVSDDQCDGRFVFGRQDLKPSNMPVIPPKQSLISR
TESGPGGDNPKSQLQTLVTRAGYATPTYKTYQLKNSQFQSTVEFKGMQITGRPCNNKKNA
EKDAASEALQWLMSDTGMGHEYINYMSMLLKKSKRDH
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgccctcttcttactcaccacatttacttctattcccttcacaatttctcacccaaacc
ctaaaaccttcactctcttttccaacgatgaaggatcggcctccatcctcatctggcgcc
gtctacatccctccccaccaccgcctcggcccccacatgtcatctcccaacaaccacaaa
gccaccaagaagggagcagatttatccgcttcagcctccacgattcactccaagcttagc
gaccgccaaaacaaacctgttttgaatgccaagggaactgctcttcctcctccttcgcta
cacttgcaacagcaacagcaacagcaacagcaacagcaacagcaacagcaacagcaacag
caggggacttataatagcaattatggtagtaaaaatagtaataatcaaaacccacagtat
aattcagcttattatttggggattcccgagaatggctctgatcaccagctggatttgcct
ttgcaatcgggttctttcaatgaagctaaccttgaagagtggaagcgaaagctagccata
ctcttacatgatgacgggaaacaggagttggtgtcaagggagaagaaggacaggcgtgac
tttgagcaaatagccgctttggcaggcagaatgggtttgtatagccatctttattccaaa
gttgccgtattcagcaaggtgcccctgcctaactacagatttgacctggatgataagcgt
ccacagagggaggtgaacttaaattttggtttgttgaagagagttgatgcctatcttgga
gaatacctttctaaaaagtgtaggaataatgaaagctttttggataattgtttttcaaga
tcaagcagtaatagcagtataattactgaagaaggtttttttgagcagccagagccacta
gcatctggcacagctgttatggagaaaattcttttgcgaagaagtttgctgctgcgtgat
cagcaacaagcgtggcaggagtctcctgaaggaaaaggaatgctagacttccgtcaaagt
cttcctgcttataaagagaaagataccatattgacagccattttgcagaatcaggttgtt
attatctcaggtgaaactgggtgcggcaagaccacacaacttccccaatttattttagaa
tctgagatagattctggccgtggagctttttgtagcattatatgtacacaacccaggcga
atatctgctatatctgtttcagaaagagttgcttcagaaagaggagagaaattgggtgaa
tctgttggatataaagtacggcttgagggtattaaagggagggatactcgtcttctcttt
tgcacaacaggcattttgttgagaagactactagtggatagaaatttaaaaggtataact
catgtcattgtggatgagattcatgaacgggggatgaatgaagatttccttctcattgtc
cttaaagatctgcttcctcgccgccctgaattaaagttgattttgatgagtgcaactttg
gatgctgagcttttctcctcatattttggcggggcacctttaatccacattccaggtttt
acatacccagttcaaacacattttttggagaatattttggagatgactggttataggttg
actccagctaatcaaattgatgattatggcgaagaaagaatgtggaaaatgagtaaacaa
gccccgagaaagaggaagagccaaattgcctcttctgttgaggatgcactccgagcagct
gattttaaggatttcagccctcagacccaggagtctttgtcatgttggaatcctgattgt
attggtttcaatctcatagaatatcttttatcatatatctgtgagaatgaaaggcccggt
gcagttctagtctttatgacggggtgggatgacataagttctctgaaggaaaagctgcaa
gctcatgcaatccttggacatcctagccgagttttgttacttacttgccatggttctatg
gctagttctgagcagaagctaatttttgaagagcctgaagatggagtgaggaaaattgta
ttaactactaatattgctgagacgagcataacgattaatgatgttgcttttgttcttgat
tgtggtaaggccaaggagacatcgtatgatgcactgaataacactccttgtttgcaatcg
tcgtggatttccaaggtttctgctctacaaagaagaggaagagctgggcgagtgcagcct
ggggagtgttaccatctctatcctcgatgtgtatacgatgccttcgctgaatatcaatta
cctgaaattttgagaacgcctttgcagtctctttgtctgcaaatcaaaattttgaaactc
ggtagtatatctgaatttctatcaagggcattgcagtcaccaaagttactggcggttcaa
aatgccattgaatatttaaaaatcattggggcgttggatgtgaatgagaatctaactgtg
ttggggcgttatttgactatgcttccaatggagccaaaacttgggaagatgctcatcctt
ggtgctatccttaattgtctggatcctgtgttaactattgttgctggtcttagtgttaga
gatccatttttgacaccattagacaagaaagatcttgcagaggctgcaaagtcgcagttt
tcccatgattatagtgaccaccttgcacttgttcgggcctatgagggctggaaagaagct
gagatagaccttactggttatgattactgctggaaaaattttctttctgcacaatcaatg
aaagcaattgattcacttcgggaggaatttctttcattgctcaaggatactggtcttatt
gatgacaatgcaactagctttaattgttggagctatgatcagcatctcatccggtcaatt
atttgttatgggctgtaccctggaatttgctctgttgtgcataatgagaaatcattttca
ctgaaaactatggaggatggacctgtgcttctatactcaaactctgttaatgctcgggaa
tctagaattccgtatccttggctggcgttcaatgagaagataaaagtgaactctgttttc
ctgcgggactcaaccgccgtctctgattcagtgcttctcctgtttggcggtagcatctca
agaggagatgtaagattttctcctgatggacacttgaagatgttgggagggtacctagaa
tttttcatgcaaccttctctagcagaaaaatatctaagtttaaggagagaatttgatgag
ctgattcaaaataaattactgaatccccaaatggtcctacatattcatcatgagttgatt
tctgccatacggctactggtttctgacgatcagtgtgatggaagatttgtatttggccgt
caggaccttaaaccatcaaatatgcctgttattccaccaaaacagtctctaatttctagg
acagagagtggtcccgggggtgataatcctaaaagtcaactccaaacattggtcactagg
gcaggatatgccacgccaacctacaagacatatcaattgaaaaacagtcagttccaatct
actgttgagttcaaaggtatgcaaatcactgggcggccttgcaacaacaagaagaatgca
gaaaaagatgctgcatctgaggctttgcagtggttaatgagtgatactgggatgggccat
gagtatatcaattatatgtcgatgttgctgaagaaaagcaagagggatcactga
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