Hibiscus syriacus (Rose-of-Sharon): 120172439
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Entry
120172439 CDS
T09559
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120172439
09123 Folding, sorting and degradation
03018 RNA degradation
120172439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120172439
03041 Spliceosome [BR:
hsyr03041
]
120172439
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120172439
mRNA degradation factors
5'-3' decay
Lsm complex
120172439
Spliceosome [BR:
hsyr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120172439
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
120172439
NCBI-ProteinID:
XP_039035822
LinkDB
All DBs
Position
Unknown
AA seq
142 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEESKSRADRKPPGVGRGRGRGGREDGPGGRQPKGPGRGLD
DGAKSAGGGRGRGGRGSGRGRG
NT seq
429 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttccctactgaaaactgcacagggtcatcccatgctggtggaactgaaa
aatggggagacgtacaatggacatttggtcaattgcgacacttggatgaacatccatctt
cgtgaagttatctgcacttcaaaggatggagacaggttttggcgaatgcccgaatgctat
atccgtggaaatacaataaagtatcttcgagttcctgatgaggtaattgataaagttcag
gaagaatcgaagagtcgtgcagataggaagcctcctggtgtaggccgtggcagaggcaga
ggaggtcgagaagatggtcctggtggaaggcaaccgaaaggacctgggcgtgggctagat
gacggtgctaagagtgctggtggaggccgaggcaggggtggtcgaggtagtggccgaggt
cgaggttga
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integrated database retrieval system
