Hibiscus syriacus (Rose-of-Sharon): 120172822
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Entry
120172822 CDS
T09559
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120172822
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120172822
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120172822
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
120172822
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HTH_44
HHH_9
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
120172822
NCBI-ProteinID:
XP_039036115
LinkDB
All DBs
Position
Unknown
AA seq
1585 aa
AA seq
DB search
MGRNVVSDEEDELEVDEEGEPIEGEGLNERDPDEEDEDDEEGQDEYENDGFIVDDVEDEE
VDEDEEREDSDEERRKKKKKRKKKEAEDLDEDDYELLRENDVNVPKGSKKFKRLKKARRD
FDEAQFGLSDDEFDGSMKGGATAEEKLKRTLFGDDDGQPLEDIAEDEEPIEEEEDGDMGE
EDEMADFIVEEDEEHGASVRRKKMKNKKSRHAPDVSSSALKEAIDIFGDVDELLLLRKQG
LDSVEQKEGKLEDQFEPTVLSEKYMTEKDDQIRMTDIPERMQISEESTGPPPIDELSIIE
ESTWIYNQLINGAVPLFGIERKDHFIDKDDIMRFLDLTHVQKLDIPFIAMYRKEQCLSLL
QDPEQHEDNDIDLDKCEKAPTIKWHRVLWAIQDLDRKWLLLQKRKSGLQSHYNKRFEEES
RRIYDETRLNLNQQLFESILKDLKGAESEREVDDVDAKFNLHFPPGEVGVDEGQYKRPKR
RSQYSICNKAGLWEVASKFGYSAEQLGAHLSLEKMEDEFEDAKETPEEIASNFTCAMFET
PQAVLKGARHMAVVEISCEPSVKRCVRNIFMDHAVVSTSPTPDGKIAIDSFHQFGGVKWL
REKPLIRFDDAQWLLIQKAEEEKLLEVTIKLPEKNLNNLIKECNENYLSNGVSKSAQQWN
EQRKLILHDALFGFLLPSMEKEARSLLASRAKNWLLLEYGKDLWNKVSVGPYQRKENDVN
SDEETAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTANLTLRSQNVHDQQHKKNDQQR
VLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDELSIVYGDESL
PRLYENSRISSDQLPGQSGIVRRAVGLGRYLQNPLAMVATLCGPGKEILSWKLNPLENFL
TADEKYNLVEQVLVDVTNQVGLDANLAASHEWWFAPLQFISGLGPRKAASLQRSLVRVGT
IFTRKDFLSTHGLDRRVFVNAVAFLRVRRSGLAANSSQFIDLLDDSRIHPESYLVAQELA
KDVYDEDLKGDNDDEDALEMAIEHVRDRPGLLRRLRIDNYLKSKSKERQSKRETFYDIKR
ELIQGFQDWRKPYKEPNQDEEFFMISGETEDTLAEGRIVQATVRRVQGGRAICALESGLT
GMIMKEDYADDWRDMVELSDRLHEGDILTCKIKSIQKNRYQVFLVCKDSEMRSNRHQHVQ
NLDPYYHEEQSSLQSEEEKARKKKELAKKHFKPRMIVHPRFQNITADEAMAYLSDKEPGE
SIVRPSSRGPSYLTLTLKVYDGVYAHKDIVEGGKEHKDVTSLLRIGKTLKLGEDTFEDLD
EVMDRYVDPLVSHLKAMLSYRKFRRGTKAEVDELLRIEKSEYPMRIVYCFGISHEHPGTF
ILSYIRSTNPHHEYVGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQQESAQSIRSVAAM
VPMRSPAAGGSAGASTGGSWGGSTNEVGWRGQSFDRGQSSTPGSRTGRNDYRNSSSRDGH
PSGVPRPYGGRGRGRGSYNSSRGHNEGQDSSYSETTKRDSVNKRGEDSWGNFPGAKVQNS
PGREAFPGGWSGSAGTESGSGSVWQ
NT seq
4758 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaatgtcgtctcagatgaagaagatgagttggaggtcgacgaggaaggagag
cccattgaaggagaaggtctcaatgaacgtgaccctgacgaggaggatgaggatgatgaa
gaaggtcaagatgagtatgagaatgatggattcatagttgatgatgtggaggatgaagag
gtagatgaagatgaagagagggaagatagcgacgaggagaggaggaagaaaaagaagaaa
agaaagaagaaggaagctgaggaccttgatgaagatgactatgagctgctccgggagaat
gatgttaatgtaccaaagggaagcaagaaatttaagcgtttgaaaaaggctcgtagagat
ttcgatgaggctcagtttggactatccgatgacgagtttgatggaagcatgaaggggggt
gcaactgctgaagaaaagcttaagcgtactctatttggtgacgatgatggacaaccactt
gaagatattgctgaagatgaagagcccatagaagaggaagaagatggagatatgggtgaa
gaagatgaaatggcagactttattgtagaagaagatgaggagcatggagcttctgttaga
cggaagaagatgaagaataagaagtcgagacatgcaccagatgtgtcatcatctgcttta
aaggaagctatagatatctttggtgatgtggatgaactcctgctgctacggaaacagggc
ttagattctgttgagcagaaagaagggaaacttgaagatcaatttgaacctactgttctc
tctgaaaagtacatgactgaaaaggatgaccaaattcgaatgactgatattccagaaaga
atgcagatttcggaagaaagcaccggccctcctccaatagatgaactcagcataattgaa
gagagcacctggatatataaccaacttataaatggtgctgtaccattatttggtatagaa
aggaaggatcattttatagacaaggatgacattatgagatttttggatctcacacatgtg
cagaaattagatattccctttattgcaatgtatcgcaaggagcagtgccttagtctgcta
caagatcccgagcaacacgaggataatgatattgatctggataaatgtgagaaagctcct
acaataaagtggcacagggtactttgggcaattcaggaccttgaccgaaaatggctgctg
cttcaaaagagaaagagtggtctccagtcacactataataagcggtttgaagaagaatct
cgtcggatatatgatgaaacaagacttaacttgaaccaacagctttttgagtcaattctt
aaagatctcaagggtgcagagtcagaaagggaagtcgatgatgttgatgccaagtttaac
ttgcatttcccacctggggaggttggtgttgatgaaggtcaatataagaggcccaagagg
agatctcaatatagtatttgcaataaggctggcctgtgggaggttgcaagcaagtttgga
tacagcgcagagcaacttggggcgcatctatctctggaaaagatggaagatgagtttgaa
gatgcaaaagagacacccgaggagattgcttcaaactttacatgtgctatgtttgagact
ccacaagctgtccttaaaggagcaaggcatatggctgtggttgagattagctgtgagcct
tctgtcaagagatgtgttcgcaatatctttatggatcatgctgtagtatcaaccagccct
actcctgatggaaaaatagccattgattctttccatcagtttggcggtgtgaagtggttg
cgtgaaaaacccttgatcagatttgatgatgctcaatggctccttatccagaaggctgaa
gaggagaagcttcttgaagtaactattaagctgcctgaaaaaaatcttaacaatttgatt
aaagaatgtaacgaaaattatcttagtaatggcgttagcaaatctgctcaacaatggaat
gagcagagaaagctgatactacatgatgctctttttggttttcttttgccctcaatggag
aaagaagcaaggtccttgttggcgagtcgagctaagaactggttacttttggagtatggc
aaggacttgtggaataaagtttctgtggggccttatcaaaggaaagaaaatgatgttaat
tccgatgaggaaactgctccgcgagtcatggcttgctgttggggccccgggaagccagca
accacttttgtgatgttggattcatctggggaggtgcttgatgtgctttatactgctaat
cttacattgcggtctcaaaatgtgcatgaccagcaacacaaaaaaaatgaccagcaacgt
gttttaaagttcatgactgatcatcaaccacatgttgttgttcttggagctgttaatttg
tcttgtactcgtttgaaggatgatatctatgagattatttttaagatggtggaggaaaat
cctagagatgttgggcatgaaatggatgagctgagcattgtgtatggggatgaatctcta
ccccggctctatgaaaattctaggatttcgtcagatcagctccctggtcagtcaggcatt
gttaggcgggctgttgggcttgggcgctatctccaaaatccgttagcgatggttgccact
ttgtgtggaccagggaaggagatactctcctggaagcttaatcctctggaaaactttctc
acagctgatgagaagtataatttggttgaacaggttttggttgatgtcacaaaccaggtg
ggccttgatgctaatttggctgcaagtcatgagtggtggtttgcacctttgcaattcatt
tctggtcttgggcctagaaaggcggcatcactgcagagatcactggtaagagtcggaaca
atttttacgaggaaggactttctgtctacccatggacttgataggagggtgtttgtcaat
gcggtagcctttctgcgtgtcagacgaagtgggcttgctgccaacagcagccagttcatt
gatttgttggatgactctagaatacatccggaatcttatcttgttgcccaagagttggcc
aaagatgtttatgatgaggatcttaagggcgacaatgacgatgaggatgcattggagatg
gcaatagaacatgttagggatcggcctggtttgttgagaaggcttcgaattgataactat
cttaaaagcaaaagcaaggagcggcaaagtaagagggagaccttttatgatataaaaagg
gaattaattcagggtttccaggattggcgtaaaccgtataaggagccaaatcaggatgag
gagttcttcatgatttcaggtgaaactgaggatacccttgcagaaggccgaattgtgcaa
gctacggtacgcagagtgcaaggagggcgagctatatgtgcacttgaatctggattgact
gggatgattatgaaagaagactatgcagatgattggagagatatggtcgagttatctgac
aggctgcatgaaggtgacatactgacctgtaagattaaatcaattcagaagaataggtat
caggtgttcctggtttgcaaagatagtgagatgagaagcaatcgacaccagcatgtccag
aacctggatccctactaccatgaggagcaaagtagcctacaaagtgaggaggagaaagct
cgtaaaaagaaggagctggcaaagaagcattttaagcccaggatgattgtccatccacgc
tttcaaaatattactgctgatgaagctatggcgtatttatctgacaaggagcctggagaa
agtattgtccgtcccagttctcgtggaccttcttatttgactttaactctcaaagtttat
gacggtgtttatgctcacaaagatatagttgaaggtggaaaagaacacaaggacgtcacc
agtctgcttcgcattgggaagacattaaaacttggggaagacactttcgaagacttggat
gaggtaatggatcggtatgttgatccccttgtttctcatctgaaggcaatgctgagttat
cgtaagttcaggaggggaactaaagcagaggttgatgagcttttaaggattgagaaatca
gagtatcctatgaggattgtgtattgtttcggcatttctcatgaacatccaggcactttc
attctttcttatatacggagtacaaatccgcatcatgagtatgtcggcttatatcccaag
ggattcaagttcaggaaaaggatgtttgaggacattgatcgtctagttgcatatttccag
aggcatattgatgatccacaacaggagtcggctcaatcaattagatcagttgcagcgatg
gtaccaatgcggagccctgctgctggaggttctgcaggggcatctactggtggtagttgg
ggtggttcaaccaatgaagttggttggagaggccaatcttttgacaggggtcaatcttcc
accccagggtcaagaacaggccgaaacgattacagaaatagcagtagccgagatgggcat
ccaagtggtgtaccacggccctatggtgggcgtggacgtggtaggggttcatacaacagc
agcagaggtcataacgaggggcaggattcatcatacagcgaaactacgaaacgggattca
gttaacaagagaggagaagatagctggggtaatttcccaggtgctaaagttcaaaactct
ccaggtagggaagctttccctggtggctggagtggtagtgctggaaccgaaagtggaagt
gggagtgtttggcaatga
DBGET
integrated database retrieval system
