KEGG   Hibiscus syriacus (Rose-of-Sharon): 120173774
Entry
120173774         CDS       T09559                                 
Name
(RefSeq) sm-like protein LSM4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
hsyr  Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018  RNA degradation
hsyr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsyr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120173774
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120173774
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsyr03019]
    120173774
   03041 Spliceosome [BR:hsyr03041]
    120173774
Messenger RNA biogenesis [BR:hsyr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     120173774
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     120173774
Spliceosome [BR:hsyr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    120173774
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 120173774
NCBI-ProteinID: XP_039036779
LinkDB
Position
Unknown
AA seq 147 aa
MLPLSVLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPVLGRGRGRGREDGPGRQPKGSRYGFEDG
AKGAGGRGRGGSGGKTSGSRGSGQGRG
NT seq 444 nt   +upstreamnt  +downstreamnt
atgcttcctctttctgtactaaaaactgctcagggccatcctatgctggtggaactaaaa
aatggggagacttataacggacatttggtcaattgcgacacttggatgaacatacatctt
cgagaagtcatctgcacttcaaaggatggagacaggttttggcgaatgccggaatgctat
atccgtggaaatactatcaagtatcttcgagttcctgatgaggtaattgataaagttcag
gaagaaacaaagagccgtgcagataggaagcctcctgttttagggcgtggcagaggaaga
ggtagagaagatggtcctggaaggcaaccaaaaggatctaggtatggatttgaagatggc
gccaagggtgcaggtggacgaggcaggggtgggtcaggtggaaagaccagtggaagcaga
ggtagtggccaaggtcgaggttga

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