KEGG   Hibiscus syriacus (Rose-of-Sharon): 120173832
Entry
120173832         CDS       T09559                                 
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
hsyr  Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsyr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120173832
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsyr03041]
    120173832
   03036 Chromosome and associated proteins [BR:hsyr03036]
    120173832
Spliceosome [BR:hsyr03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    120173832
 Complex B
    120173832
 Complex C
   U2 SnRNP specific factors
    120173832
Chromosome and associated proteins [BR:hsyr03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    120173832
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 HEAT_2 Htt_N-HEAT_1 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N
Other DBs
NCBI-GeneID: 120173832
NCBI-ProteinID: XP_039036829
LinkDB
Position
Unknown
AA seq 1268 aa
MDIDSEIAKTQEERRRKEEELASLTSLTFDRDLYGGTDRDAYVTSIPVNEDDDANLNSMD
SEVARKLASYTAPKSLLKEMPRGEEDDNSLGFRKPAKIIDREDDYRRRRLNQVISPDRHD
AFAAGEKTPDPSVRTYADVMREQALKREKEETLRAIAKKKKEEEEAAMVEKESGGTAAAV
PKRRNRWDQSQDDDSSAAKKAKTSDWDLPDATPGIGRWDATPTPGRVSDATPSVGRRNRW
DETPTPGRVADSDATPAGGVTPGATPAGVTWDATPKGLVTPTPKRQRSRWDETPATMGSA
TPMAGATPNVPLTPGVTPFGGTDXQTPTPSNLRGPMTPEHYNLLRWEKDIEDRNRPLTDE
ELDAMFPQEGYKILEPPSSYVPIRTPAXKLLATPTPMGTPLYAIPEENRGQQFDVPKEPP
GGLPFMKPEDYQYFGSLLNEENEDELSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTD
KAREFGANALFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPL
LIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGI
PALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLKSLVEIIEHGLNDENQKV
RTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAIY
ASYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRNDILPEFFRNFWVR
RMALDRRNYRQLVETTVEMANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVANLGA
SDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRL
NNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAI
VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICF
ELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVA
ETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDR
DLVHRQTAASAVKHMALGVAGLGCEDALVHLMNYVWPNIFETSPHVINAVTEAIEGMRVA
LGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPILEDEQSSEQNNIYS
RPELMMFV
NT seq 3807 nt   +upstreamnt  +downstreamnt
atggacatagatagcgagatagcgaaaacccaagaagagcgaaggcgaaaagaggaggaa
ctcgcctcgcttacctccctaactttcgaccgggatctttacggcgggacagacagggat
gcttacgttacttccatccctgtcaacgaggacgatgatgcgaatctcaattccatggat
tctgaggttgctcggaagctcgcctcttatacggcccccaaatcactcctcaaggagatg
ccccgtggtgaagaagatgataactcgttagggtttaggaaacccgcgaaaattattgat
cgtgaagatgattataggaggaggaggttgaaccaagtcatttctccggatagacatgat
gcatttgccgctggagagaagacgccggatccctccgtgaggacttatgccgatgtgatg
agagagcaggcattgaagagggagaaggaagagactttaagagctatagcaaagaagaaa
aaggaggaagaggaggcggctatggtagagaaagagagtggtggtacagctgctgcggtg
cctaagaggaggaatagatgggaccagtcccaagatgacgatagttctgctgcaaagaag
gctaaaacgtctgattgggatttgcctgatgcgactcctggtattgggcgttgggatgct
acacctacgcctgggagagtttctgatgcaaccccatcagttgggaggaggaataggtgg
gatgagacaccaacacctgggcgggtggctgattcagatgcaacccctgcaggtggagtt
acccctggtgcaaccccagctggggttacatgggatgctactccaaaagggttggttact
cctacgccaaaacgacagagatctaggtgggatgagactcctgcaaccatggggagtgcg
actccaatggcaggggctacaccaaatgttcctcttacacctggggttactccttttggt
ggtactgatntgcaaacaccaactccaagtaatcttcgcgggcctatgactccggagcac
tataatttgttgaggtgggagaaagatattgaggataggaatcggccattgactgatgag
gagcttgatgctatgttcccacaagaagggtataagattttggaaccaccttcatcttat
gtgcctattaggacacctgctncgaagcttcttgctactccaactcctatgggaactcca
ctttatgctattcccgaggagaatcgtgggcagcagtttgatgtgcctaaggaaccacct
ggtgggctgccatttatgaagcctgaggattatcagtattttgggtcattgttgaatgag
gaaaatgaggatgagctgtctccagaagagcagaaggaacggaagatcatgaaacttttg
ttgaaggtaaagaatggaacaccaccacagagaaaaactgctctgaggcagctcactgat
aaggcaagggaatttggtgctaatgcattatttaataggattctgccattgcttatgcaa
cctacattggaagatcaagagaggcatctcttggttaaggttattgacagggttctgtat
aaattggatgagctggttaggccttatgtgcacaagattcttgttgtgatcgaacccttg
ttgattgatgaagattattatgcacgtgtggagggtagagaaatcatttctaatctcagt
aaggcagctggcttggctactatgattgctgcaatgcgtcctgatattgacaacattgat
gaatatgttaggaatacaactgctagagcttttagtgttgttgcttctgcacttgggatt
cctgcacttctgccatttttgaaagctgtgtgtcagagtaagaagtcatggcaagctagg
catactgggatcaagattgttcagcagattgctattttgattggttgtgctgttcttcct
cacttaaagtccctagtagaaatcatagaacatggtttgaatgatgagaatcagaaggtg
aggacaattactgctttgtctctggctgctcttgctgaggctgctgccccctatggtatt
gaaagttttgactcagttttaaaaccattgtggaagggtatcaggtctcaccgaggtaaa
gtattggctgcatttttgaaggccattggttttatcattcctttgatggatgcgatttat
gctagttactatacaaaggaagttatgttcattcttatccgtgagttccagtctcctgat
gaagaaatgaagaagattgtgctcaaggtggtgaagcaatgtgtgagcacagagggtgtt
gaagccgagtacatcaggaatgatattctacccgagttcttcaggaatttttgggtgaga
aggatggcattagataggagaaactatcggcagcttgtggagacaactgttgagatggca
aataaagtaggtgttgctgacattgtagggagaatagtggaggatctgaaggatgagagt
gaaccctacaggcgtatggtaatggaaacaattgagaaggtggttgcaaatttgggtgca
tctgatattgatgccaggttggaggaacttctgattgatggtattctttatgctttccaa
gagcagaccagtgatgatgccaatgtgatgcttaatggatttggtgctgttgtgaattca
cttgggcagagagtgaaaccttatcttccccagatctgtggtaccataaaatggcgattg
aataacaagagtgccaaggtcaggcagcaggcagctgatcttatttcaagaattgctgtg
gttatgaaacaatgccaagaggaacaattgatgggccatcttggggttgttctatatgag
tatctcggtgaggagtaccctgaagttttgggatctattttaggagccctcaaggcaatt
gtcaatgttattggtatgacaaaaatgacgcctccaatcaaggatttgcttccaaggtta
acacctattttgaaaaataggcatgagaaggtccaggaaaactgcattgatctggttggc
cgtattgctgatcgaggtgcagagtttgtaccagctagggagtggatgaggatttgtttt
gagcttcttgagatgcttaaagctcacaagaagggtattcgaagagctactgtcaatact
ttcggatatattgctaaagccattggcccacaagatgtcttggccactctattaaacaat
ctcaaagtacaagaacgtcagaaccgtgtttgtactactgtggcgattgcaattgttgct
gaaacatgttctcctttcacagttttaccagcattgatgaatgagtaccgagtgccggaa
cttaatgtgcagaatggtgtcttgaaatctctttccttcctgtttgagtatattggtgaa
atgggcaaagattacatctatgctgtgactccattacttgaggatgctctcatggataga
gatttggttcacaggcaaactgcagcctcagctgtgaagcacatggctttgggagtcgcc
gggttaggttgcgaggatgctttagtccacttgatgaactatgtttggcccaacatattc
gagacttcgcctcatgtcataaatgctgtcacggaggccattgaagggatgagggtagcc
ttaggtgctgcagtggtactgaactattgtctgcagggtctcttccatcctgctagaaag
gttagggaagtatattggaagatatataattcattgtatatcggagctcaagacgctcta
gttgcagcatatcctattctagaggatgagcagagtagtgagcagaacaacatatacagt
aggccagagttgatgatgttcgtataa

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