Hibiscus syriacus (Rose-of-Sharon): 120174539
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Entry
120174539 CDS
T09559
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120174539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120174539
03041 Spliceosome [BR:
hsyr03041
]
120174539
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120174539
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120174539
Spliceosome [BR:
hsyr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120174539
Complex B
120174539
Complex C
U2 SnRNP specific factors
120174539
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
120174539
TFTC complex
120174539
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
120174539
NCBI-ProteinID:
XP_039037282
LinkDB
All DBs
Position
Unknown
AA seq
1214 aa
AA seq
DB search
MYLYNLTLQQATGIVSAINGNFSGGKIQEIVVARGKILSLLRPDELGKLQTLHSVEIFGC
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGVAAGEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDIRAVIPRRADLPEERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVTLEHGNDGVTELKIKYFDTIPVTASMCVLKTGFLFAASEFGNHALYQFQAI
GDDPDVESSSSTLMETEEGFQPVFFQPRGLKNLVRIDQAESLMPIMDMKIANLFEEETPQ
IYSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVTDAFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQIHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNGLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSVQSVSSPPESLLFLEVKASIGGEDGADHPANLFL
NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVKVRGRPAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVLQPKRKLLVIIESDQGSYTAEEREAARKEFFEAAGMGENGNGNMNQMENGGDDEDK
EDPLSDEQYGYPKAESNKWVSCIRVLDPRTAATTCLLELQDNEAAFSVCTVNFHDKEYGT
LLAVGTAKGLQFWPKRSLVAGFIHIYRFIEDGRSLELLHKTQVEGVPLALCQFQGRLLAG
IGSVLRLYDLGKKRLLRKCENKLFPNTIVSIQTYRDRIYVGDIQESFHFCKYRRDENQLY
IFADDVVPRWLTASFHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGRL
NGAPNKVEEIVQFHVGDVVTSLQKASLIPGGGECVLYGTVMGSLGALLPFTSRDDVDFFS
HLEMHMRQEHPPLCGRDHMGYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPG
EILKKLEEARNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacaatttaactcttcaacaggccaccggcatcgtttccgccataaatggg
aacttctccggcggaaaaatccaagaaattgttgtcgcccgtggtaagatcctttcactt
ctccgccccgacgaactcggtaagctccaaacacttcactctgtcgaaattttcggctgc
atacgttctctagctcagttccggctaaccggagctcaaaaggactacattgtagtaggg
tccgattcaggtcggattgttatccttgaatacaataaagagaagaatgtctttgataaa
gttcaccaagaaacttttgggaaatctgggtgtcggcggattgtcccgggtcaatactta
gctattgacccgaaaggaagagctgtaatgattggtgcttgtgagaagcagaagctagtt
tatgttttgaatagagatactgctgctaggttaaccatttcttcacctttagaagctcat
aagtcgcatacgatagtttactcgatctgtggggttgattgtggattcgataaccctatt
ttcgctgcaattgagttggattactcagaggcagatcaggattctacgggagtggctgct
ggtgaggcacagaagcatttgactttttatgaacttgatttagggcttaaccatgtgtcg
aggaagtggtcggaacaggttgataatggggcgaacatgttggtcacggtgcctggtggt
ggtgatgggccgagtggggttttagtttgtgctgagaattttgttatttacaagaatcaa
gggcatccagacattagagcggtgatccctagacgggctgatttgccagaagaacgtggt
gttttgattgtgtcagcagctacacataagcaaaagtcgatgttcttctttcttttgcag
acagaatatggggatatttttaaggttacgttggaacatggaaatgatggagttacggaa
ttgaaaataaagtattttgatacaattccggttacggcttcgatgtgtgtgttgaaaact
ggttttctttttgcagcttcggagtttgggaatcacgctttgtatcagtttcaggctatt
ggagatgaccctgatgttgaatcgtcatcatctacattgatggaaacagaagaaggtttc
cagccagtgtttttccagccaagagggcttaagaatctagttaggattgaccaagctgag
agtctgatgccaataatggatatgaaaattgctaatctctttgaggaggaaacaccgcag
atatattcactttgtggacgtggtcctcgttcatcattgaggatactaaggcctggtttg
gccatcagtgagatggctgtctcacagcttcctggtgtcccaagtgctgtgtggacggta
aagaaaaatgttactgatgctttcgatgcatacattgtcgtgtcatttgccaatgcaact
cttgttctttccattggtgaaacagttgaagaagttagtgatagtggttttctcgatact
actccctctcttgctgtttcattgattggtgatgattcacttatgcaaattcacccaaat
ggtattaggcatataagggaagatggacgtattaatgagtggagaacacctgggaaaagg
acaattgttaaagttggctcaaatgggcttcaagtggttattgcactgagtggaggtgag
ctcatatactttgaggtggatatgactggccaattgatggaagtggagaagcatgaaatg
tctggagatgtggcatgtctggacattgcccctgttcctgaaggaagacagaggtcccgc
tttcttgctgttggttcatatgataatacaatccgtatattatctttggatcctgatgat
tgtatgcaggttctgagtgttcagagtgtatcttcacctcccgagtctcttcttttcctt
gaagttaaggcatcaattggtggggaggatggtgctgatcatcctgccaatcttttcctt
aatgctggtctgcagaatggagttctgtttcggacagtagtggatatggttaccgggcaa
ctttctgattcccgttcacgattcttagggctgagagccccaaagttgttctctgttaaa
gtaagaggacgacctgcaatgctttgcttgtctagtcgaccatggcttggttatattcac
caaggacattttctgttaacacctctttcttatgagacacttgaatttgcggcctcattt
tcgtctgatcagtgtgctgaaggtgttgttgctgtggctggggatgcattgagagttttc
accattgagcgtcttggagaaaccttcaatgagactgctattcctttgaggtatactcct
aggaggtttgttttgcaaccaaagcggaaattgttggtaattattgagagtgaccaagga
tcatatactgcagaagagcgtgaagctgcaagaaaggaattctttgaggctgctggaatg
ggagaaaatggcaacggtaatatgaaccaaatggaaaatggcggggatgatgaggacaaa
gaggatcccctctctgatgagcagtatggttatccaaaggcagagtcaaacaagtgggtt
tcttgcattagggttcttgatccaaggacagctgctacaacttgccttttggagctccag
gacaacgaagctgctttcagtgtgtgtactgtgaatttccatgataaagagtacggaact
ctcctggctgttggcacagccaagggtctacagttttggcccaaaagaagcttggttgcg
ggattcatccatatttataggtttatagaagatggccgatcactggaacttctgcacaag
acacaagtggaaggtgttcctcttgctttatgccagtttcagggaagattacttgctggg
ataggatctgtactccgattatatgatttggggaaaaagagactgcttaggaaatgtgag
aataagcttttccccaacactattgtctctatccaaacttaccgtgatagaatatatgtt
ggggatatccaagagtctttccatttttgcaagtataggagagatgaaaatcagctgtat
atatttgccgatgatgttgttccaagatggcttactgcgtcgttccatatagattttgac
accatggctggtgcagacaagtttgggaatgtctattttgtacggctaccccaagatgta
tctgatgaaatagaggaagatccaactggtggaaagataaaatgggaacaagggaggctc
aatggagctcctaacaaggtagaagagatagttcagttccatgtcggagatgtggtaact
agcttgcagaaggcgtctcttataccaggtggcggagagtgtgttctttatgggacagta
atggggagcttgggggcattgctccccttcacttcccgtgatgatgttgactttttttct
cacctagagatgcatatgagacaagaacacccccctttgtgcggacgggatcatatgggt
tatagatctgcttatttccctgtcaaggatgtgattgatggagatttgtgcgagcagttt
cctaccctacctatggatctgcagagaaaaattgccgacgagttggatcgtactcctggg
gagatactgaagaaacttgaagaagcccgaaacaagatcatttga
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