Hibiscus syriacus (Rose-of-Sharon): 120174988
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Entry
120174988 CDS
T09559
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120174988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120174988
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120174988
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120174988
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
120174988
NCBI-ProteinID:
XP_039037634
LinkDB
All DBs
Position
Unknown
AA seq
651 aa
AA seq
DB search
MSGLLNSSINGSASNLPDSSGRSFATSFSGQSGAASAVFHHAGNIQGLHNIHGSFNVPNM
PGTFTSRNSTLGNVPTAGVQQPTGSLSGGRFASNNLPVALSQLSHGSSHGYSGVTNRGGI
SVVGNPGFSSYTNGVGGSIPGILPSSAAIGNRNAVPGLGVSPILGNAGSRITSSIGNVVG
GGNIGRSISSGGGLSVPGLASRLNLSVNSGSGSLSVQGQNQLMSGVLPQGSPHMISMLGN
SYPTAGNPLSQSHAQAVNNLSSMGMLNNMNANDNSPFDINNDFPQLTSRPSSAGGPQGQL
GSLRKQGLSPSVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHHKEQLHDNTMSMMQSQQ
FSQQQLHGPSASSSGASFSPVNNQDLLHFHGSDIFPSSHSSYHSQTSGPPGTGLRTLNSP
NTVSGVGYEQLIQQYQQRQNQSQFRLPQMLALNQSSRESGLQSIQATQSNPDPFGLLGLQ
SLIKMTNPDLTSLALGIDLTTLGLNLNSSENLHKTFSSPWSDEPAKGDPEFTVPQCYYAK
QPPALHQGYFSKFTVDTLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRMWFIRVPNVE
PLVKTNTYERGSYHCFDPKSFESIRKVGTTVSPNSLLCCFLVFTVIHDSSC
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttactaaattcttctatcaacggatcagcatcaaaccttccagatagtagt
ggacgttcttttgcaacatctttctctggtcagtctggtgcagcctctgctgttttccat
catgctggcaatattcagggtttgcataatattcatggtagctttaatgttcccaacatg
cctggtacattcacatcaagaaactcaacattaggtaatgttccaactgctggggttcaa
caacctactgggagcctatctggtggaagatttgcatcaaataatcttcctgttgctctt
tctcagttatctcatggcagctcccacggatattcaggagtaacaaatagaggaggtatt
agtgttgtaggaaatcctggatttagtagttacacaaatggagttggtggttctatacct
gggattctcccttcctctgctgcaattggtaaccgcaatgctgtcccaggattgggagta
tctccaattttgggaaatgcaggttctaggataacgagttctataggaaacgtggttggt
gggggaaacattgggaggagcataagctctggtggtggattatctgtacctggtcttgca
tctcgtctgaatttaagtgtcaatagtggatctggaagtttaagcgtgcagggacagaat
caattgatgagtggtgtgcttcctcagggatctcctcacatgatttcaatgttgggcaat
tcttatcctactgctggaaatcctctttcccagagccatgctcaagctgttaacaacctt
agctctatgggaatgttgaataacatgaacgcaaatgacaattctccttttgacataaat
aatgatttccctcagctgacaagtcgtcctagttctgctggaggacctcaaggacaattg
ggttcattgagaaaacaaggtcttagtcccagtgttcaacaaaaccaagagtttagcatt
caaaatgaggatttccctgctttaccaggatttaaaggtggtaatgctgattatgcaatg
gatatgcaccataaggaacaacttcatgacaataccatgtcgatgatgcaatctcaacag
ttctctcagcaacagctacatggtccatcagccagtagtagcggtgcctccttttcacct
gtaaacaaccaagatctcctccattttcatggctcagatatattcccatcttcacattcg
agctaccattcacagaccagtggaccacctgggactgggctaagaactctaaattcgcca
aatacggtttctggtgtcggttatgagcagctcatccaacaatatcagcaacgccaaaac
cagtctcagtttcgtcttccacagatgttggctttgaatcaatcatctagggaatctggc
ctgcaatcaatacaggctacgcagtctaatcccgacccatttgggttacttggtttgcag
agtttaataaaaatgactaatcctgatctgacttcccttgctcttggaattgatctgaca
acccttgggttgaatttgaattcatcggaaaatcttcacaagacttttagttctccatgg
tctgatgaaccagcaaagggtgacccagagttcactgtaccacaatgttattatgctaag
caaccacctgctttacatcaaggttatttttcaaagttcacagtggacacattgttctat
atattttacagcatgccaaaagacgaagctcagttatacgccgcaaatgaactttacaat
agaggctggttttaccacaaggagcaccgaatgtggttcataagggttcccaatgttgag
ccactagtgaagacgaacacatacgagagaggttcttatcattgttttgatccaaaatca
tttgaatcaatccgaaaggtcggaactacagtatctcctaattcattattatgttgcttt
ttagtttttactgttattcatgactctagttgctga
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