KEGG   Hibiscus syriacus (Rose-of-Sharon): 120175669
Entry
120175669         CDS       T09559                                 
Name
(RefSeq) histone deacetylase 19 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
hsyr  Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03082  ATP-dependent chromatin remodeling
hsyr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:hsyr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    120175669
   03083 Polycomb repressive complex
    120175669
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:hsyr03036]
    120175669
Enzymes [BR:hsyr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     120175669
Chromosome and associated proteins [BR:hsyr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     120175669
   HDAC complexes
    Sin3A-HDAC complex
     120175669
    BRAF-HDAC complex
     120175669
    REST complex
     120175669
    SHIP complex
     120175669
    MiDAC complex
     120175669
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     120175669
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    120175669
  Chromatin remodeling factors
   NuRD complex
    120175669
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 120175669
NCBI-ProteinID: XP_039038202
LinkDB
Position
Unknown
AA seq 478 aa
METGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ
VHKPFPARDRDLCRFHADDYVNFLRSVTPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHQRVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKYYCLNVPLDDGI
DDESYHYLFKPIISKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGMEVDDKMPQHEYYEYFGPDYTLHVAPSNMEN
KNSRRLLEEIRNRLLDNLSKLQHSPSVHFQERPPDTELPEADEDQDDGDERWDSDSDMDV
DEDRKLIPSRVKREVIRPDTKDTQVQKGTVEQARGSVTDETGVDVSPMPIDEPTVKVE
NT seq 1437 nt   +upstreamnt  +downstreamnt
atggagaccggagggaattcgttaccttcggggaccgacggcgtgaagaggaaggtgtgc
tatttctacgacccggaggtggggaactattattatggccaaggtcaccctatgaagcct
cacagaattcgaatgactcatgcccttctagcacactatgggctgcttcagcatatgcaa
gttcacaagcccttccctgctagggatcgggatctttgccgcttccatgctgatgactat
gtgaactttctccgcagcgtaacccctgaaacacagcaagatcaactcagacagctcaag
cgctttaatgttggtgaggattgtccagtctttgatggcctttactccttctgtcaaact
tatgcaggtggctccgttggtggtgctgtcaaattaaaccatggtctatgtgacattgcc
attaactgggctggtggcctgcatcatgcaaagaagtgtgaggcctcgggcttttgctat
gtcaatgatattgtccttgccattctggaacttcttaagcagcatcagcgtgttctatat
gtcgatattgatatccaccatggagatggtgtggaggaggcattttatacaactgacagg
gtcatgactgtttcatttcataaatttggagattattttcccggtacgggtgatatacgt
gatatcggatattcaaaagggaaatactattgcctcaatgttcctttggatgacgggatc
gatgatgagagttatcattacctgtttaaaccaatcatcagtaaagttatggaagttttt
aagcctggtgctgtggttcttcaatgtggtgccgactctctatctggagatcggttgggg
tgtttcaatctttcaatcaagggtcacgcggagtgtgttaaatttatgagatcattcaat
gtcccgttattgcttctaggtggtggcgggtataccattaggaatgttgctcgctgttgg
tgctatgagacaggagttgcacttggaatggaagttgacgacaagatgcctcagcacgag
tattacgagtatttcggtccagattatactcttcatgttgcccctagtaacatggaaaac
aaaaactcacgccggttactcgaagaaattcgtaataggctactcgacaatctctcaaag
cttcagcattcgccaagtgtccattttcaagaaaggccacctgatacggagcttcctgag
gctgatgaagatcaagatgatggagatgaaagatgggactcggattcagacatggacgtt
gatgaggaccgtaagctcattccaagtagagtaaagagagaagtgatcaggccagatacg
aaagatacgcaggtccaaaaaggaacagttgagcaagctagaggatctgtgacagatgag
actggtgtagatgtcagtccaatgccgatcgatgaaccaactgtgaaagtcgagtaa

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