Hibiscus syriacus (Rose-of-Sharon): 120175858
Help
Entry
120175858 CDS
T09559
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120175858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120175858
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120175858
mRNA degradation factors
5'-3' decay
Decapping complex
120175858
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
EIF3I
CSTF_C
Beta-prop_EML_2
Sey1_3HB
Motif
Other DBs
NCBI-GeneID:
120175858
NCBI-ProteinID:
XP_039038347
LinkDB
All DBs
Position
Unknown
AA seq
1363 aa
AA seq
DB search
MASTGNPNQAIPFDVQSFFKPTVSNPSNSNPQPQNPSPSPYPTPSPPFFHPQYHQFYMPP
SSPTRSNYQDAKSLSFPSPPFSPYNAGNQILALINSSPQNPDIPPQKQPPQLQPPPHARF
LGSGSPNVGPSRVHSCKLPRGRRLSGAQAAYDIDTRLSGEDQPQLEVTPITKYGSDPQLV
LGRQIGVNKSYICYGLKGGSIRILNLNTALRSLFRGHTQRITDMAFFAEDVHLLASVSLE
GRVYVWKISEGPDEEDKPQITGKIVIAVQILGDKEYVHPRVCWHRHKQEVLVAAIGKHIL
RIDTMKVGKNEVYSTDAPSPLHCPIDKLIDGIQLVGKHDGEVTDVSMCQWMITRLVSAST
DGTIKIWDDRKAVSLTVLRPHDGRPVYSATFLTAPHRPDHIILMTGGPLNQEIKVWTSAS
EEGWLLPSSTEKWICTQTLDLKSSAVPQMEDALFNQVVALSQAGLFLLANAKRNAIYAVH
IEYGSCPAASHMDYIAEFIVTMPVLSFTGTSDPPDEHIVKIYCVQTQAIQQYALELCQCI
PQPLENIGLENSDSSISLDAANTEGYDSFDPSGNKPSELPLYTSVPKPSKQVSSYENLRD
VRYTSSPRSTTEANAVQELNTSNIDPKSASALGSAASDADIGCIASQRAVPPSPRLSRKH
SGFHNYDPTYQLGDHVGNQLVVDFPVDRQMDTVRSNLSGMQSSEDGSRNGDKKIISDEKS
SAYNPPIIFKHPTHLLTPSEILMAATSSEITNVNEGKSEGELHIQDVVVSNDACNAELEV
KVVGETRSSQNNEFGSYGDLQNRNFEIREKFFCSQASDLGIRMSRESSAMSRDAYFVDES
RQADGVGASGSHVKPNVGEEENNDSRKDLYGKVSESAMPSTYQQSPAPSGKGKKNKGKSS
LASALSSPSSSAFNSADSSTEPGANSNLPLAGAAFPQIAAVQDMLNQLITTQKEMQKKMS
NIVNAPVTREGKRLEAALGRCIEKALKANTDALWARFQEENAKNEKMLREHTQQMTRLIT
NFMNKDLAVMLDKVIKKELAGFGPAVARTITPAIEKTVTSAINESFQKGVGDKAVNQLEK
SVNSKLEAIVARQIQAQFQTSGKQALQEALRTSVEALAVPAFEVSCKALFEQVDAAFQKG
MAEHTNAAQQQLDSANSSLTITLKDAINSASSIAKTLSGEFAEGQRKILALAAAGANASA
ATSLSSQLSNGLLGSLHDKVVVPMDPTKELSKLLSEGKYEEAFTIALQRSDLSIVAWVCS
QVDLRMILSTNPVTLSQGVLLSLLQQLACDINKDTPRKLAWMVDVATAINPGDQMIAVHV
RPIFQEVCKRVHEISSSTLLTGAEHASIRALVYVINYVLMTCK
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgacagggaacccaaatcaagccatcccatttgatgtgcagagcttcttcaaa
cccacagtttcgaacccatcgaattcaaaccctcagccgcaaaatccttccccatcaccg
taccccacgccttctcctcccttctttcacccacagtatcaccaattctacatgccccct
tcgtccccaacgcgttcgaattaccaagacgccaaatccctctccttcccttcccctcct
ttcagcccttacaatgccggcaaccaaattctcgccctgatcaactcgtcccctcaaaac
cctgatatcccgccccagaagcagcccccccagctgcagccgccgccccatgctcggttt
ttggggtccgggagtcccaatgtggggccttcgagggtgcatagctgtaaattgcctcga
gggagacggttatcaggcgctcaggcggcgtacgatatcgatacgaggctgtccggcgag
gatcagcctcagcttgaggtcactccgattacaaagtatgggtctgatcctcagctggtt
ttgggaagacagattggtgttaataagtcttatatttgttatggtttgaaaggaggcagt
attcggattcttaatttaaacactgcattgaggtctttgtttcgtggacacacgcagagg
atcacagacatggctttctttgctgaggatgttcatcttttggctagtgtgagtctagag
ggaagggtatatgtttggaagatatctgaaggtccggatgaggaggataagccacagatt
acagggaagatagttatcgctgttcaaatattaggtgacaaggaatatgtacatccgcgt
gtttgttggcaccggcacaaacaagaagttttggtggctgcgattggaaaacacattctg
agaattgatactatgaaagtagggaagaatgaagtctactcaactgatgcaccttcacct
ctccattgtcctattgacaagttgatcgatgggattcagttggttggtaaacatgatgga
gaagttactgatgtttcaatgtgtcaatggatgattacccgtttagtttctgcttctaca
gatggcacgataaagatatgggatgaccgcaaagcagtgtcactaacagttttgaggcca
catgatggccgacctgtttattcggctacattcttaactgcacctcaccgacctgatcat
ataatactcatgacaggggggcccctaaatcaagaaatcaaagtttggacttcagcaagt
gaagagggttggctacttccaagcagtactgaaaaatggatttgcacccagacattagac
ttaaagagctctgctgtacctcaaatggaggacgctttattcaaccaagttgttgcatta
tctcaagctggccttttcttacttgcaaatgctaaaagaaatgctatatatgccgtgcac
atagaatatggttcttgtccagctgcatcacacatggattacatagccgagttcattgtc
acaatgcccgtattaagttttactgggacaagtgatcctcctgatgaacatattgttaaa
atatattgtgttcagacacaggctatccagcagtatgctttggaattatgccagtgcatc
ccgcaaccactggaaaatattggcttagagaattcagattcaagcatttcacttgatgct
gccaacactgaaggctatgattcttttgatccatctggaaataaaccttctgagttgccg
ctttatacttcagttcccaaaccaagtaaacaagtaagtagctatgaaaatttaagagat
gtgaggtatacttcaagcccccgttctaccactgaggcaaacgctgtacaagagttgaat
acttcgaatattgatcctaaatctgcttctgctttgggatcagctgcaagtgatgctgat
attggttgcattgcatcacaacgagcagttcctcctagtcctaggttgtccaggaagcac
tctggttttcataactatgacccaacttaccagcttggtgaccatgttggaaaccaactg
gttgtggattttccagttgacagacaaatggacactgttcgatcgaatttatctggtatg
caatcatcagaagatggttcaaggaatggtgacaagaaaataatatcagatgagaaatct
agtgcatataatcctcccatcattttcaagcatccaactcatcttctgaccccttccgag
atattaatggctgcaacatcttctgaaattaccaatgtcaatgagggaaagagtgaaggc
gagttacatattcaagatgtggttgtcagtaatgatgcatgcaatgctgagttggaggta
aaagtggtgggtgaaacgagatcatctcagaacaatgaatttggttcctacggagacctt
caaaatcggaattttgaaattagagagaaattcttttgctctcaggcttcagatctcggt
atccggatgtcaagggagagctctgcaatgtcaagggatgcttactttgttgatgaatct
aggcaagcagatggtgttggtgcatcaggttcgcatgtgaagcctaatgttggtgaggaa
gaaaacaatgattccagaaaagatctgtatggaaaggtctcagaatcagcgatgccttct
acatatcaacaatcaccggcaccaagtggaaaagggaaaaagaataaagggaaaagttct
ctggcatctgctctctcttctccttcttcaagtgctttcaattctgcagattcttccacc
gaaccaggagcaaattccaatctccccttagcaggtgctgcatttcctcaaattgcggct
gtgcaagatatgcttaatcagctaattactacacaaaaggaaatgcagaaaaaaatgtca
aatattgtgaacgccccggttacaagagaaggcaaaaggcttgaggctgctcttggacgg
tgcattgagaaagcccttaaggccaacactgatgctctatgggctcgtttccaagaagag
aacgcgaaaaacgaaaagatgctgcgagaacatacacagcagatgacgcgcctgataacc
aattttatgaacaaggatttggcagtaatgttggacaaagtaatcaagaaggagttagct
ggatttggacctgctgtagctcgtaccattactccagcaatagagaaaactgtaacttca
gcgatcaacgagtctttccagaaaggggtcggagataaagcagtgaatcaactagaaaaa
tctgttaattcaaaactcgaagctatagttgccagacaaattcaagcacagtttcaaact
tccggcaagcaagctctccaggaggctttgaggactagtgtggaagctttagcggtcccg
gcctttgaggtttcatgcaaagcgttgttcgagcaagtagacgctgcatttcaaaaaggg
atggctgagcatacgaatgctgctcagcagcaattggactctgcaaattcttctttgaca
attacgttaaaggatgccataaattctgcgtcgtcgattgctaaaaccttaagtggggaa
tttgctgaaggacaaaggaaaattttagcccttgcagctgctggagctaacgcaagcgct
gcaacttcattgtcttcccaactcagcaatggacttttaggttctctgcatgacaaggtt
gttgtgcccatggatccaacgaaagagctatcgaaattattatcggaaggcaaatacgaa
gaagcgttcacaattgccctgcaaagaagtgacctctccattgttgcttgggtttgttca
caggtcgatctacggatgattctgtcgaccaatcctgttactttgagccaaggggtgctg
ctctccctcttgcagcagttggcgtgcgacatcaacaaggacacgccccgaaaactcgca
tggatggtagacgtggccacggctatcaacccgggcgaccaaatgatcgcggtgcacgta
agaccaatctttcaggaagtctgcaagagagtgcacgaaataagtagctcgactttgctt
acgggtgccgaacacgctagtatccgagctctcgtctatgtcatcaactatgttctaatg
acatgtaaatga
DBGET
integrated database retrieval system
