Hibiscus syriacus (Rose-of-Sharon): 120176434
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Entry
120176434 CDS
T09559
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120176434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120176434
03041 Spliceosome [BR:
hsyr03041
]
120176434
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120176434
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120176434
Spliceosome [BR:
hsyr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120176434
Complex B
120176434
Complex C
U2 SnRNP specific factors
120176434
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
120176434
TFTC complex
120176434
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
120176434
NCBI-ProteinID:
XP_039038795
LinkDB
All DBs
Position
Unknown
AA seq
1214 aa
AA seq
DB search
MYLYNLTLHQATGIVSAINGNFSGGKIQEIVVARGKILSLLRPDELGKLQTLHSVEIFGC
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGVAAGEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDIRAVIPRRADLPEERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVTLEHGNDGVTELKIKYFDTIPVTASMCVLKTGFLFAASEFGNHALYQFQAI
GDDPDVESSSSTLMETEEGFQPVFFQPRGLKNLVRIDQAESLMPIMDMKIANLFEEETPQ
IYSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVTDAFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNGLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSVQSVSSPPESLLFLEVKASVGGEDGADHPANLFL
NAGLQNGVLFRTVVDMITGQLSDSRSRFLGLRAPKLFSVKVRGRPAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVLQPKRKLLVIIESDQGSYTAEEREAARKECFEAAGMGENGNGNMNQMENGGDDEDK
EDPLSDEQYGYPKAESNKWVSCIRVLDPRTATTTCLLELQDNEAAFSVCTVNFHDKEYGT
LLAVGTAKGLQFWPKRSLVAGFIHIYRFLEDGRSLELLHKTQVEGVPLALCQFQGRLLAG
IGSVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHFCKYRRDENQLY
IFADDVVPRWLTASYHMDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGRL
NGAPNKVEEIVQFHVGDVVTSLQKASLIPGGGECVLYGTVMGSLGAFLPFTSRDDVDFFS
HLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPG
EILKKLEEARNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacaatttaactcttcatcaagccaccggcatcgtttccgccataaacgga
aacttctccggcggtaaaatccaagaaattgtcgtcgcccgtggcaagatcctttccctt
ctccgacccgacgaactcggtaagctccaaacgcttcactccgtcgaaatatttggctgc
atacgttctctagctcagttccggctaaccggagctcaaaaggactatattgtagtaggg
tctgattcgggtcggattgttatacttgaatacaataaagagaagaatgtctttgataaa
gttcaccaagaaacttttgggaaatctgggtgtcgacggattgtcccgggtcaatactta
gccattgacccgaaaggaagagctgtaatgattggtgcttgtgagaagcagaagttggtt
tatgttttgaatagagatactgctgctaggttaaccatttcttcgcctttagaagctcat
aagtcgcatacgatagtttactcgatctgtggggttgattgtggatttgataaccctatt
ttcgctgcaatcgagttggattactcagaggcggatcaggattctacgggggtggctgct
ggtgaggcacagaagcatttgactttttatgaacttgatttagggcttaaccatgtgtcg
aggaagtggtcggagcaggttgataatggggcgaacatgttggtcacagttcctggtggt
ggtgatgggccgagtggggttttagtttgtgctgagaattttgttatttataagaatcaa
ggacatccagacattagagcagtgattcctagacgtgctgatttgccagaagaacgtggt
gttttgattgtgtctgcagctacacataagcaaaagtcgatgttcttctttcttttgcag
acagaatatggggatatttttaaggttacgttggaacatggaaatgatggagttacggaa
ttgaaaatcaagtattttgatacgattccggttacggcttcaatgtgtgtgttgaaaact
ggttttctatttgcagcttcggagtttggcaatcacgccttgtatcagtttcaggctatt
ggagatgaccctgatgttgaatcatcatcatctacattgatggaaacagaagaaggtttc
cagccagtgtttttccagccaagagggcttaagaatctcgttaggattgaccaagctgag
agtctgatgccaataatggatatgaaaattgctaatctctttgaggaggaaacacctcag
atatattcactctgtggacgtggtcctcgttcgtcattgaggatactaaggcctggtttg
gccatcagtgagatggctgtctcacaacttcctggtgtaccaagtgctgtgtggacggta
aagaaaaatgttactgatgccttcgatgcatacattgtcgtgtcgtttgccaatgcgact
cttgttctttccattggtgaaacagttgaagaagttagtgatagtggttttcttgatact
actccctctcttgctgtttcattgattggtgatgattcacttatgcaagttcacccaaat
ggtattaggcatataagggaagatggacgtattaatgagtggagaactcctgggaaaagg
acaatcgttaaagtcggctcaaatgggcttcaagtggttattgcactgagtggaggtgag
ctcatatactttgaggtggatatgaccggccaattgatggaagtggagaagcatgaaatg
tctggagatgtggcatgtctggacattgcccctgttcctgaaggaagacagaggtcccgc
tttcttgctgttggttcgtatgataatacaatccgtatattatctttggatcctgatgat
tgtatgcaggttctgagtgttcagagtgtatcttcacctcccgagtctcttcttttcctt
gaagttaaggcatcggttggcggggaggatggtgctgatcatcctgccaatcttttcctc
aatgctggtctgcagaatggagttctatttcggacagtagtggatatgattaccgggcaa
ctttctgattcccgttcacggttcttagggctgagagccccaaagttgttctctgttaaa
gtaagaggccgacctgcaatgctttgcttgtctagtcgaccgtggcttggttatattcac
caagggcattttctgttaacacccctttcttatgagacacttgaatttgcagcctcattt
tcatctgatcagtgtgccgaaggtgttgttgccgtggctggggatgcattgagagttttc
accattgaacgtcttggagaaaccttcaatgagactgctattcctttgagatatactcct
aggaggtttgttttgcaaccgaagcggaaattgttggtaattattgagagtgaccaagga
tcatatactgcagaagagcgtgaagctgcaagaaaggaatgctttgaggctgctggaatg
ggagaaaatggcaatggtaatatgaaccaaatggaaaatggcggggatgatgaggacaaa
gaggatcccctctctgatgagcagtatggttatccaaaggcagagtcgaacaagtgggtt
tcttgcattagagttcttgatccaaggacagctaccacaacttgccttttggagcttcag
gacaacgaagctgctttcagtgtatgtactgtgaatttccatgataaagagtatggaact
ctcctggctgttggcacagccaagggtctccagttttggcccaaaagaagcttggttgcg
ggattcatccatatttataggtttctagaagatggcagatcacttgaacttctgcacaag
acacaagtggaaggtgttcctcttgctttatgccagtttcagggaagattacttgctggg
ataggatctgtgctccgattatatgatttggggaaaaagagactgcttaggaaatgtgag
aataagcttttccccaacactattatctctatccaaacttatcgtgatagaatatatgtt
ggggatatccaagagtctttccatttttgcaagtataggagggatgaaaatcaactgtat
atatttgccgatgatgttgttccaagatggcttactgcatcataccatatggattttgac
accatggctggcgcagacaagtttgggaatgtctattttgtgcggctaccgcaagatgta
tcggatgaaatagaggaagatccaactggtgggaagataaaatgggaacaagggaggctc
aatggagctcctaacaaggtagaggagatagttcagtttcacgtcggagatgtggtaact
agcttgcagaaggcatctcttataccaggtggcggagagtgtgttctttatgggacggta
atggggagcttgggggcatttctcccattcacttcccgtgacgatgttgactttttttct
cacctagagatgcatatgagacaagaacaccctccgttgtgcggacgagatcatatggct
tatagatctgcttatttccctgtcaaggatgtgatcgatggtgatttgtgcgagcagttt
cctacactacctctggatctgcagagaaaaattgccgatgagttggatcgtactcctggg
gagatactgaagaaacttgaagaagcccgaaataagatcatttga
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integrated database retrieval system
