Hibiscus syriacus (Rose-of-Sharon): 120177398
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Entry
120177398 CDS
T09559
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120177398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120177398
03009 Ribosome biogenesis [BR:
hsyr03009
]
120177398
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120177398
Spliceosome [BR:
hsyr03041
]
Complex A
U1 snRNP components
U1 related factors
120177398
Complex B
120177398
Ribosome biogenesis [BR:
hsyr03009
]
Eukaryotic type
Pre-60S particles
Helicases
120177398
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
120177398
NCBI-ProteinID:
XP_039039492
LinkDB
All DBs
Position
Unknown
AA seq
683 aa
AA seq
DB search
MAATATASSAAPRYAPPDPTLPEPWKGLVDGKTGYLYFWNPVTNVTQYERPTSVEYVPKS
YFVPISSQIQVQQSSEGHNGYNPDKENDRHGRGSNDVSKLEPVSRYNQSAGGGLVHSHNT
PNGTYGSVIGGSARGHGLVAGGSYLSGDAYRHQHEITVTGDEVPLPYSSFEATGFPSEIL
REVYSAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLIPGFMHLKRCGKDPRMG
PTVLVLSPTRELATQIQDEALKFGKSSRISSTCLYGGALKAPQLRDIERGVDIVVATPGR
LNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEIPTRRQTLMYTATWPKEVR
KIAADLLVNPVQVNIGNIDELVANRSITQYVEVLSPMEKHRRLEQILRSQEPGSKIIVFC
STKKMCDQLARNLSRHFGAAAIHGDKSQADRDYVLNQFRTGRTPVLVATDVAARGLDIKD
IKVVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFFADQDAKHASDLIKVLEGANQLVPA
ELRDMASRGGGMGRPRRWAPSSGGFNGRHGGRTDSGFGGRGGYGISTSSSSWHDRSGGRG
YDHESRDRYNRGFHDSYDKGHSHSRSPAGLGDRHKNIGRDRSRSRSADRYDNGRSYGDSQ
HEQARSGFTNGTRIGSGNAEDDH
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggctgctacagcgactgcctcttctgctgctccaagatacgcaccgccagatcccact
cttcccgaaccatggaaaggtttagttgatggtaaaactggttatctctacttttggaat
ccggtaaccaatgttactcaatatgaaagacctacaagcgtagaatatgttccaaagtct
tattttgtgcctataagttctcaaattcaagttcagcaatcttctgaaggacataatgga
tataatcctgacaaagaaaatgatcggcatggaagaggcagcaatgatgtatcaaaactt
gagccagtatcacggtataaccagagtgcaggcggtggacttgttcattcccataataca
cctaatgggacttatggctctgtgattggaggatctgctaggggacatggattggtggct
gggggaagttatttgtctggtgatgcttatcgccatcagcatgagataactgtaacagga
gatgaagtgcccctgccctattcttcatttgaagcaactggctttccttctgagatactt
agagaggtatacagtgctgggttttctgctccgacaccaattcaggctcagtcgtggcca
attgcattgcaaggtagagacatagtagccattgctaaaactggttctgggaaaactttg
ggttacctaattcctggatttatgcatctcaagcggtgcggtaaagatcctcgaatgggt
cctactgtattagtgttgtcacctacaagggagttggctactcagatacaagatgaagct
cttaagtttgggaagtcctcaagaattagttccacgtgtttgtatggaggagcactgaag
gctcctcaattgagagatattgagagaggagtagatattgtagttgccactcctggccgg
ttaaatgatattctagaaatgaggagaatcagtcttcatcaagtttcttatcttgtgtta
gatgaggctgatcgcatgttggacatgggttttgaacctcaaattcggaagattgtgaaa
gagatccctactcgcaggcagactctgatgtacacggcaacatggccaaaggaagttcga
aaaattgcagcagatctactggtaaaccccgttcaggtcaacattggcaatatcgatgaa
cttgtggcaaacaggtctattacacagtatgttgaagtattatcaccaatggagaaacac
agaagattggagcagatactgcgttcccaagaaccaggatcgaaaattattgttttttgt
tcaaccaagaagatgtgtgatcaactggctcgtaacctcagtcgacattttggagctgct
gctatacatggagacaaatctcaggctgacagggactatgtgctgaatcagtttcgaacc
gggaggacaccagttcttgtcgctactgatgttgctgctcggggattggacattaaagat
atcaaggtggtaatcaactatgacttccctactggagttgaagattatgttcataggatt
ggaaggactggaagggcaggtgcaaccggattggcatatacattttttgctgatcaggat
gcgaagcatgcatcagatctcatcaaagttttagaaggagcaaaccagctggtgcctgca
gaacttcgtgatatggcttcacgtggtggagggatgggaaggcctaggcgttgggctccc
agttctgggggctttaatgggaggcatggtggacgtactgattcggggtttggtggaagg
ggtggttatggaatttctacctcatcttctagctggcatgatagaagtggtggacgcgga
tatgatcacgagtctcgtgataggtataatcgtggtttccatgatagttacgataaggga
catagtcacagtcgaagtcctgctgggttgggtgatcggcataaaaacattggccgtgat
cgcagccggagtcgtagtgctgacaggtatgataatggaagatcgtatggtgattctcag
catgagcaggcaagatcgggatttacgaatgggactcgtataggttccggcaatgcagag
gatgatcattga
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