Hibiscus syriacus (Rose-of-Sharon): 120179516
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Entry
120179516 CDS
T09559
Name
(RefSeq) RNA-dependent RNA polymerase 1-like
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120179516
Enzymes [BR:
hsyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
120179516
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
120179516
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RdRP
RdRP_head
PH_RDR2
RRM_RdRP1_2
RdRP_helical
RDR6_2nd
RRM_1
Motif
Other DBs
NCBI-GeneID:
120179516
NCBI-ProteinID:
XP_039041024
LinkDB
All DBs
Position
Unknown
AA seq
1111 aa
AA seq
DB search
MSKKTIQVNGFLSNVSAAEVTTFLEGYTGKATVFALKIRQQRNGAKAYAIVQFNESSDAE
RIIRLANHGLYYRSSYLKARQMEKDIVQKPRTFLHTMELITVHFGCQVSDEKFYDLWNSD
DVTVKFGAGMRKLLFLLSHCGSEYKLELFYENIWQIELHRAYNRTSKHLLIQLFGAPRIY
EKEVRSSGLVFDDPLFNYFMDAPDDQWVRTTDFTRSYCIGQSSALCLELPHNLELPNFQE
NFAYYKENEGRLVLESGCSYSCNLTLVPSVRPRLGVNLPFEILFKVNLLVQNGCIPGPAL
DDTFYRLVDPSRMEKVYIDYALEKLYYRKECCYEPLRWLFEEYRVYTRSTIHPVSPAISL
DYGLVYVRRVQITPSRIYFVGPEINVSNRVLREFRNDIDNFLRISFVDEELDKIHSMNVQ
ARGRRTGIYERILSTLRNGIVIGDKRFDFLAFSSSQLRENSAWMFASRMGLSAADIRSWM
GNFSRIRNVAKYAARLGQSFSSSTETLSVNKDEINHIPDIEVVTDQNKFVFSDGIGKISG
EFAKRVAAKCHLNGTVPSAFQIRIGGFKGVVAVDPTSPWKLSLRKSMEKYESESTKLDVL
TWTKYQPCFLNRQLITLLSTLGVPDCAFERKQREVVDQLNALLTDPLKAQEALELMSPGE
NTNILKEMLQCGYKPDEEPFLSMMLQTFRASKLLELRTKTRIFIKNGRSMMGCLDETRTL
NYGQVFVQFSGSRPGQRFLVQDKVVVAKNPCLHPGDVRVLSAIDVPDLYHLVDCIVFPQK
GTRPHPNECSGSDLDGDIYFVCWDTDLIPPKQIEPMDYSPAPSVTLDHEVTIEEVEEYFT
NYIVNDSLGIISNAHVAFADREPGKAMSHSCLELAKLHSIAVDFPKTGVPAEIPQELRVK
EYPDFMEKPDKPSYQSHRVIGKLFREVKSLAPNECSINSLTQDKMKRFYDPDMEVDGFED
YIDDAFFHKSNYDYKLGNLMDYYGIKTEAEILSGCVMKMARSFTKRRDAEAVNMAVRSLK
KEARSWFNEKRSGSDDEIDDAYAKASAWYYVTYHPSYFGQYNEGMNRDHFLSFAWCVYDK
LIQTKKEIASIRRALDMSSLESRFRRGLGLD
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagaagacaattcaagttaatggcttcctctcaaacgtgtctgctgcggaagta
acgacatttttagagggatataccggcaaagctaccgtctttgccctcaagattaggcag
cagaggaacggtgcaaaagcatatgctatcgtgcaattcaacgaaagctccgatgcagag
cgaattattaggttggctaatcacggactttactaccggagttcgtatcttaaggctcga
caaatggagaaggacatcgtgcagaagccgagaacctttttgcacacgatggagctcatt
acggtgcatttcggctgtcaggtctcggatgaaaaattttatgatctctggaactctgat
gatgttactgtgaaatttggggcaggaatgcggaaattgctgtttctactctcacattgt
ggatcggaatacaagcttgagcttttctatgagaacatctggcagatcgagctgcatcgt
gcttacaatcgaacctcaaagcatcttctgatccagttatttggtgctccacggatatac
gagaaagaagtgcgcagttccggacttgtattcgatgatcccttgtttaactacttcatg
gatgcacctgatgatcaatgggtaaggacaactgatttcactcgatcgtattgtatcggc
cagtcttctgcattatgtttggagcttccacacaacctcgaacttccgaattttcaggag
aactttgcttactacaaagaaaacgaaggcagattggttttggaaagtggctgttcttat
tcttgcaatcttacccttgtcccaagtgttcgccctaggctgggagttaacttgccattt
gaaatattgttcaaggttaatttgttggtgcaaaatgggtgcatcccgggaccagcactc
gatgatactttttatcgactcgtcgatccttctagaatggaaaaagtctacatagactat
gcactggagaaactttattatcgaaaagaatgctgctatgaacctttgaggtggctcttt
gaggagtaccgagtttacaccagatcgacgatacatcctgtgtcgcctgccatatccttg
gactatggtttggtatatgtaagaagggttcagataacaccttctaggatctacttcgtt
ggccctgagattaatgtttctaaccgtgtgttacgtgaattccgtaacgatattgataat
tttctgcgcatcagttttgtcgatgaagagttggataagatccattcaatgaatgtgcag
gcaaggggtaggcgaactggtatttatgaaaggattctttctactcttcgaaatggcata
gtgatcggggataagagattcgactttcttgccttttcatcgagccagttaagggaaaat
tcagcctggatgtttgcttcgagaatggggctcagtgcagctgatataaggtcatggatg
ggaaattttagtagaataagaaatgtcgcaaaatatgctgctcgacttggccaatctttc
agttcatcaaccgaaactcttagtgttaataaagatgaaatcaaccatattccagatata
gaagttgttacggatcaaaataaatttgtcttttctgacggaattgggaaaatatcaggt
gaatttgctaagagggtggctgctaaatgccacttgaatggtaccgtcccgtcggcattt
cagattcggattggcggattcaaaggtgttgtggctgttgaccccacctcaccttggaag
ttatccctcagaaagagtatggaaaagtatgaatcagagagcacaaaactagatgttttg
acttggactaagtatcagccttgtttcctcaaccgccagttgattactctgttatctact
ctcggggttccagactgtgctttcgagagaaaacaaagagaagtagtagatcaactcaat
gcccttctgacagatcccttgaaggctcaggaggcgctggagttgatgtctccaggagaa
aataccaacattctcaaggaaatgctccaatgtggttataagcctgatgaagaaccattc
ctttccatgatgttgcaaacattccgagcgtcaaagttactggagttgcggactaaaacc
aggatattcattaaaaatggaaggtctatgatgggatgcctagacgaaaccagaacattg
aattatggccaagtgtttgtgcagttttctggctctagacccgggcaacgttttctcgtt
caggataaggtagttgtcgcgaaaaacccttgcttgcaccctggcgacgtgcgtgtcttg
agcgcaattgatgttcctgatctgtaccatttagtggattgtatcgtctttccacagaaa
ggaactagacctcatccgaatgaatgttcgggaagtgatctggatggtgatatctacttt
gtctgttgggacacggatctgattccgccaaagcaaattgagcctatggattactcacca
gctccaagtgttacactggatcatgaagtaaccattgaggaagttgaagaatatttcaca
aactacatagtcaatgacagtttaggaatcatttcaaatgctcatgttgcttttgctgat
agagaacctggcaaagcgatgagccactcgtgtctggaacttgccaagctgcattcgatt
gcggttgactttccgaaaacgggcgtaccagctgaaataccacaagaattgagagtcaaa
gaatatccggatttcatggagaagccggacaaaccaagttatcaatcacacagggttatt
ggaaagcttttccgggaggtgaaaagtcttgcacctaacgaatgctcgatcaattcctta
actcaggacaaaatgaagaggttttatgatcccgacatggaagtcgatggctttgaggat
tatatcgacgatgctttcttccacaaaagtaattacgattacaaactggggaacttgatg
gactattatgggatcaagaccgaggccgaaatcctcagtggctgtgtcatgaaaatggcg
agatctttcacgaagagaagagacgcagaggccgtcaatatggccgtgaggtcattgaaa
aaggaagctaggtcatggttcaatgaaaagcgaagtggatcggatgatgaaatagacgat
gcatatgcaaaagcctcggcttggtactatgtcacataccatccaagttattttggtcag
tataatgagggaatgaatagggatcattttctgagctttgcttggtgtgtttatgacaag
ctgatccaaaccaagaaagagattgcgagcattcggagagctttggatatgtcgtctttg
gaaagccggtttcgacgtggattgggtttggattga
DBGET
integrated database retrieval system
