Hibiscus syriacus (Rose-of-Sharon): 120179858
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Entry
120179858 CDS
T09559
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120179858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120179858
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120179858
mRNA degradation factors
5'-3' decay
Decapping complex
120179858
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
CelTOS
Beta-prop_EML_2
PGDH_C
DUF445
Motif
Other DBs
NCBI-GeneID:
120179858
NCBI-ProteinID:
XP_039041261
LinkDB
All DBs
Position
Unknown
AA seq
1370 aa
AA seq
DB search
MASTGNPNQAIPFDVQSFFKPTVSNPSNSNPRPQNPSPSPYPTPSPYQSPSPPFFHPQYH
QFYMPPPSSPTHSNYQDAKSLSFPSAPLSPYNAGNQILALINSSPQNPDLSPQNQPPKLK
QPPHAEFSGSGGPNVGPSRVSSCKLPKGRRLSGARVAYDIDTRLSGEVQPQLEVTPITKY
GSDPQLMLGRQIAVNKSYICYGLKGGSIRILNLNTALRSLFRGHTQRITDMAFFAEDVHL
LASVSLEGRVFVWKISEGPDEEDKPQITGKIVIAVQILGDEEFIHPLVCWHRHKQEVLVA
AIGKHILRIDTMKVGKNEVYSTDAPSPLHCPVDKLIDGIQLVGKHDGEVTDVSMCQWMIT
RLVSASTDGTIKIWDDRKAVPLAVLRPHDGQPVYSATFLTAPHRPDHIILITGGPLNQEI
KVWTSASEEGWLLPSNTENWTCTQILDFKSSAEPQMEDAFFNQVVALSQAGLFLLANAKR
NAIYAVHLEYGSCPAASRMDYIAEFTVAMPILSFTGTSDPPDEHIAKIYCVQTQAIQQYA
LELCQCIPPPLENISLEKSDSSVSHDVTNTDGYDSFDSSGNKPSELPLYTSVPKPSKPVS
SSENLSAPRYPSASYSTTEVNAAQELNTSNIDPKSASALALTASDVDISCVASPPAVPPS
PRLSRKHSGFHNYEPTSQLVDHVGNQMVVDYPVDRQMDTVRSNLSGMHSLEDGSRNDDKK
IISDEKSNAYNPPIIFKHPTHLVTPSEILMAATSSETTNVNEGKSESEVHIQDVVVNNDA
RNAELEVKVVGETRSSQNNEFGSHGDSQNQNFETREKYFCSQASDLGIQMSRDSSAMSRD
AYVVDESRQADGVGASDSHVKPNAGEEEHNDSRKNLFGKILESAMPSTYQQSPAPGGKGK
KHKGKNSQASAHSSPSSSAFNSADSAAEPGASSNPPATVAAFPQVAAMQEMLNQLITTQK
EMHKQMSNMVNTPVTKEGKRLEAALGRSIEKALKANSEALWARFQEENEKNEKLLREHTQ
QITSLITNFMNKDLAAMLDKVIKKELAGVGPTVVRTITPAIEKTINSAINESFQRGVGDK
AVNQLEKSVNSKLEAIVARQIQAQFQTSGKQALQDSLRTSVEALVVPAFEISCKALFEQV
DAAFHKGMVEHTNAAQQQLDSTNSSLTITLRDAINSASSIAKTLSREYAEGQRKILALAA
AGANSNAATSLASQLSNGPLVSLHDKVIVPMDPTKELSKLLSEHKYEEAFTIALQRSDLS
IVAWLCSQVDLRTILSTNPFPLSQGVLLSLLQQLACDINKDTPRKLAWMVDVTTAINPGD
QMIAVHVRPIFQEVYKRVHEISSSPLLTGAEHASIRALIYVINYVLMTCK
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgacaggaaacccgaatcaagccatcccattcgatgtgcagagtttcttcaaa
cccacggtttctaacccgtcgaattcaaaccctcggccgcaaaatccttcgccatcaccg
tatcccacgccttcgccttatcaatcaccctctcctcctttctttcacccgcagtatcac
caattctacatgcctcctccttcgtcccccacccattctaattaccaagatgccaaatcc
ctttctttcccttccgctcctcttagtccttacaatgccggcaaccaaattctcgccctt
atcaactcgtcccctcaaaaccctgatttatcacctcagaatcagccccccaagctgaag
cagccgcctcacgccgagttttcggggtccgggggtcccaatgtggggccttcgagggtg
tcgagctgtaaattgccgaaaggaaggcggttatcgggcgctcgggtggcttacgatatc
gatacgagattgtccggcgaggtccagcctcagcttgaggttactcccataacgaagtac
gggtctgatcctcagctgatgctaggaaggcagattgctgttaataagtcttatatttgt
tatggtttgaaaggtggcagtataaggattcttaatttaaacactgctttgaggtctttg
tttcgggggcacacacagaggatcacggacatggctttctttgctgaggatgttcatctt
ttggctagtgtgagtctagagggaagggtatttgtttggaagatatctgaaggtccggat
gaggaagataaaccacagattactgggaagatagttattgctgttcagatattaggtgac
gaggaattcatacatccgcttgtttgttggcacagacacaaacaagaagttttggtggct
gcgattggtaaacacattctgagaattgatactatgaaagttgggaagaatgaagtctac
tcaactgatgcaccttcacctcttcattgtcctgttgataagttgattgatgggattcag
ttggttggtaaacatgatggagaagttacggatgtttcaatgtgtcaatggatgattacc
cgtttagtttctgcttctacagatggcacaataaagatatgggatgaccgcaaggcagtg
ccactagcagtgttgagaccacatgatggccaacctgtttattcggctacattcttaact
gcacctcaccggccggatcatattatactcataacaggggggcccctaaaccaagaaatc
aaagtttggacatcagcaagtgaagaaggttggctacttccaagcaatactgaaaactgg
acttgcacccagatattagactttaagagctctgctgaacctcaaatggaggacgcattc
ttcaaccaagttgttgcattatctcaagctggccttttcttacttgcaaatgctaaaaga
aatgctatatatgctgtacacttagaatatggttcttgtcctgctgcatcacgcatggat
tacatagctgagttcaccgtcgctatgcctatattaagttttactgggacaagtgatcct
cctgatgaacatattgctaaaatatattgtgttcagacacaggctatccagcagtatgct
ttggaattatgccagtgcatcccaccaccactagaaaatatcagcttagagaaatcagat
tcaagtgtttcgcatgatgttaccaacactgatggttatgattcttttgattcatctgga
aataaaccttctgagttaccgctttatacttcagtccccaaaccaagtaaaccagtaagt
agctctgaaaatttaagtgcaccaaggtatccttcagcctcctattctaccactgaggta
aatgcagcacaagagttgaatacttcgaatattgatcctaaatctgcttctgctttggca
ttaacagcaagtgatgttgatatcagttgcgttgcatcaccaccagcagttcctcctagt
cctaggttgtctaggaagcactctggctttcataactatgagccaacttcccagcttgtt
gaccatgttggaaaccaaatggttgtggattatccagttgacagacaaatggacactgtt
cgatcaaatttgtctggtatgcattcattagaagatggttcgaggaatgacgacaagaaa
ataatatcagatgagaaatctaatgcatataacccacctatcattttcaagcatccaact
catcttgtgacgccttcagagatactgatggctgcaacatcttctgaaactactaatgtc
aatgagggaaagagtgagagcgaggtgcacattcaagatgtggttgtcaataatgatgca
cgcaatgctgaattggaagtaaaggtggtgggtgaaacaagatcatctcagaacaatgaa
tttggttctcatggtgactcccaaaatcagaatttcgaaactagggagaaatatttctgc
tctcaggcttcagatcttggtattcagatgtcaagggatagctctgctatgtcaagggat
gcttacgttgttgatgaatctcggcaagcagatggtgttggtgcatcagattcgcatgtg
aagcctaatgcgggcgaggaagaacacaatgattccagaaaaaatctgtttggaaagatt
ttagaatcagccatgccttctacatatcaacaatctccggcaccaggtgggaaagggaaa
aagcataaagggaaaaattcacaggcatctgctcactcttctccttcttcaagtgctttc
aattctgcagattctgctgctgaaccaggagcaagttccaatccccccgcaacagttgct
gcgtttcctcaagttgcagctatgcaagagatgctaaatcagctaattactacacaaaag
gaaatgcacaaacaaatgtccaatatggtcaacaccccggttacaaaagaaggcaaaagg
ctggaggctgctctaggacggagcattgagaaagcccttaaggccaactctgaagctcta
tgggctcgatttcaggaagagaatgaaaaaaatgagaagctgcttcgagaacatacacag
cagataacgagcttgatcactaattttatgaacaaggatttggcagcaatgttggacaaa
gtaatcaagaaggagttagctggagttggaccaactgtagtccgtaccattactccagca
atagagaaaaccataaattcagcaatcaatgagtccttccagagaggggttggagataaa
gcagtgaatcagctagaaaaatctgttaattcaaaactcgaagctatagttgccaggcaa
attcaagcacaatttcaaacttctgggaagcaagctctccaggattctttgaggactagt
gtggaagctctagtggtccccgcctttgagatttcatgcaaagccttgtttgagcaagta
gacgcagcatttcacaaagggatggttgagcataccaacgctgctcagcagcagttagat
tctacaaattcttctttgacaattactttaagggatgccataaattctgcatcatcaatt
gctaaaaccttaagcagggaatacgctgaaggacaaaggaaaattttagcacttgcagct
gctggagccaactccaatgccgcgacttcgttggcttcccaactcagcaatggaccttta
gtttcactgcatgacaaggtcattgtgccgatggatccaacgaaagaactatcgaaatta
ttatctgaacacaaatatgaagaagctttcacaattgccctgcaaagaagtgacctctcc
atagttgcttggttatgttcacaggtcgatctacgtacgattctgtcaaccaatcctttt
cctttgagccaaggggtgctgctctccctcttacagcaattggcatgcgacatcaacaag
gacacgccacgaaaactcgcatggatggtagacgtgaccacggctatcaaccctggagac
caaatgattgcagttcacgtgcgaccaatctttcaggaagtctacaagagagtgcacgaa
ataagtagctctccgttgcttacgggtgctgaacacgcgagtatccgagctctcatttat
gtcatcaattatgttctaatgacatgtaaatga
DBGET
integrated database retrieval system
