Hibiscus syriacus (Rose-of-Sharon): 120180554
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Entry
120180554 CDS
T09559
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120180554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120180554
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120180554
Transcription machinery [BR:
hsyr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120180554
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120180554
PBAF complex
120180554
GBAF(ncBAF) complex
120180554
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Zn_ribbon_2
CLP1_P
Motif
Other DBs
NCBI-GeneID:
120180554
NCBI-ProteinID:
XP_039041798
LinkDB
All DBs
Position
Unknown
AA seq
772 aa
AA seq
DB search
MPASSPSDGRGRCKRRKRDRRPKHLQEENDVVHEDDAEEENNNDDDIDNHRDNNSGEDTG
GGVADPSLARSGDSEVLAEGGVRVSEFPAVVKRTVNRPHVSVMAIVAAERAGMVGDSKAH
QQVALAVLENVSYGQLQAVSTEAPIVEPEKYVITPPPIMEGRGVVKRFGSRVHVMPMHSE
WFSPSTVHRLERQVVPHFFSGNSPEHMPEKYMECRNRIVAKYMDNPEKRITVSDCQGLIY
GISDEDLARIVRFLDHWGIINYCAAAPCHEPWNAESYLREEPNGEIHVPSAALKSIDSLI
KFDKPKCRLKAADVYSSLPCRDDFYDLDSRIRECIYENNCTSCSQPVPTSYYQSQKDFDA
LLCSNCFHDGRFVSGHSSIDFARVDSTKDYWDLDGDSWTDQETLLLLEAMEIYNENWNEI
AEHVGTKSKAQCILHFLRLPMEDGLLENLEVPSMPKSTIVSNGDSQRLHSNMNGSLPGPS
LQDADSESKFPFANFGNPVMAMVAFLASAVGPRVAAACAHASLAALAEDEHKEGSGHGNR
MKTESVHGGEGSFHGSIHQKENSEIQGSFGQNKAEVHSLSAEKVKAAAKSGLAAAAMKAK
LFADHEEREIQRLSANIINNQLKRLELKLKQFEEVETLLMKECEQVEKTRQRFAERVRFI
SAQFGPAGVTSQMSLPGISSPMVNNNINNRQQVISASPSPSSIAGYATNQPLHPQMPFMQ
RQPMFPMDPWMPLTAMQASTSTPPNVMFNSPVNVQPAHNNPLMRSVSGTGSV
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttcttctccttcagatggtcgaggacgatgtaaacgacggaagcgagaccga
aggcccaaacatctccaagaagaaaacgatgttgttcatgaagatgatgcagaagaagaa
aataacaatgacgatgatatcgataatcaccgggataacaactccggcgaagataccggt
ggaggagttgcggatccgtctttggcgaggtccggagacagtgaggttttggctgaaggt
ggagttcgcgtctcggagttccccgccgtggtgaagcgaactgtgaaccgtcctcacgtt
tctgtaatggcgatcgttgcggctgaacgggcgggtatggttggggatagcaaggcccac
cagcaggtggctttggcggttttggagaatgtttcttacgggcagttacaggcggtttca
actgaagctcccattgttgaaccggagaagtatgtgattacacctcctccaataatggaa
gggcgtggcgttgttaagaggtttgggagtagggttcatgtcatgccaatgcattcagag
tggttttcaccatccacagtgcatcgactagaaagacaagttgtgccacattttttctct
ggaaattcacccgaacacatgccagaaaaatatatggaatgtagaaaccgcattgttgcc
aagtatatggacaatccagagaagagaattacagtttctgattgccaggggttgatatac
ggaatcagtgatgaggatttagctcgaattgttcggtttcttgatcattggggaattatt
aattattgtgcagctgcaccatgccatgagccatggaatgctgagtcctacttaagggag
gaaccaaatggtgagattcatgtgccatcagctgcattaaagtctattgatagcttgatc
aaattcgacaaaccaaaatgtaggctcaaggcagctgatgtttattcatcattgccatgt
cgtgatgatttctatgacttggacagcagaatacgagagtgcatatatgaaaacaattgc
acttcatgttctcagcctgttcccacatcatattatcagtcgcagaaggattttgatgct
ctgttgtgctctaattgcttccatgatgggagatttgtttctggccattcaagtatagat
tttgctagggtagattcaacaaaagattactgggacctagatggagatagttggactgat
caggaaacattactgttgcttgaggcaatggaaatttacaatgagaactggaatgaaata
gcagagcatgtcggcactaagtctaaagcacaatgcatacttcattttctacgtctaccc
atggaggatggcctgttggaaaatttggaagttccaagcatgcccaagtcaaccattgtt
tcaaatggagacagccaaagattgcactcaaacatgaatgggagtctaccaggacccagc
cttcaagatgcagattctgaaagcaagtttccttttgctaattttgggaatccagttatg
gctatggttgcatttttggcgtctgctgttggaccaagagttgctgctgcttgtgcccat
gcatccttggcagcattggctgaagatgaacataaggaaggttctggacatggtaatagg
atgaaaacggagagtgtacatggtggagaaggtagttttcatggttccattcatcaaaaa
gagaactcagaaatacaaggttcatttggtcaaaacaaggccgaggttcattcactatct
gctgaaaaagttaaagctgctgccaaatctggcttagcagctgcagctatgaaggcaaaa
ctttttgcagatcatgaggaacgagaaattcaaaggttatcagctaatatcattaataat
cagttgaagagattagagctgaagctgaagcagtttgaggaagtcgaaacgttactcatg
aaagaatgtgaacaagtggagaaaacgaggcaaaggtttgctgagagggttcgctttata
tcggcccaatttggacctgctggagtcacttcacaaatgagtctacctgggatttcttct
cccatggttaacaataacatcaacaacaggcaacaggtaatatcagcctcaccttcccca
tcgagcattgccggatatgccaccaaccaaccattacatcctcagatgccattcatgcaa
cgccaaccaatgtttccgatggatccgtggatgccccttacagccatgcaagcatccacg
tcaactcctccaaatgtcatgttcaactccccagtgaatgtgcaacccgctcataacaat
ccacttatgaggtcggtttcggggactgggtcggtctag
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