KEGG   Hibiscus syriacus (Rose-of-Sharon): 120181561
Entry
120181561         CDS       T09559                                 
Name
(RefSeq) replication factor C subunit 4-like
  KO
K10755  replication factor C subunit 2/4
Organism
hsyr  Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03030  DNA replication
hsyr03410  Base excision repair
hsyr03420  Nucleotide excision repair
hsyr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hsyr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120181561
   03410 Base excision repair
    120181561
   03420 Nucleotide excision repair
    120181561
   03430 Mismatch repair
    120181561
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hsyr03032]
    120181561
   03036 Chromosome and associated proteins [BR:hsyr03036]
    120181561
   03400 DNA repair and recombination proteins [BR:hsyr03400]
    120181561
DNA replication proteins [BR:hsyr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    120181561
  DNA Replication Termination Factors
   ELG1-RFC complex
    120181561
Chromosome and associated proteins [BR:hsyr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    120181561
DNA repair and recombination proteins [BR:hsyr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     120181561
  Check point factors
   HRAD17(Rad24)-RFC complex
    120181561
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_16 Mg_chelatase AAA_11 AAA_5 AAA_25 AAA_assoc_2 SLFN-g3_helicase AAA_14 ResIII AAA_24 nSTAND3 DUF3853 AAA_2 PhoH AAA_28 AAA_7 AAA_19 DNAX_ATPase_lid AAA_30 RNA_helicase Parvo_NS1 bpMoxR NPHP3_N Ribophorin_II DUF815 IstB_IS21 TIP49 AAA_18 NB-ARC
Other DBs
NCBI-GeneID: 120181561
NCBI-ProteinID: XP_039042591
LinkDB
Position
Unknown
AA seq 342 aa
MAPVLQSSQPWVEKYRPKKVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRAGGYPCPPFKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS
SRILHICDQEGLNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSSISSNNLISVSGVI
PREVVEALYAACKSGNFDLANKEVLNVIAEGYPVSQMISQLFNVVVEADDVPDEQKARIC
KSLAEADKRLVDGADEYLQLLDVASHTMRALHDMPQEFSFET
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggcgccagtattgcagagctcccaaccttgggttgaaaaatatcggccaaagaaagtg
aaagatgtggcgcatcaagacgaggttgttcgagttctcaccaacaccctcgagacagcc
aattgcccccatatgctcttttacggtcctcctggaaccggaaaaaccactaccgctctc
gccatcgcccatcagctatttggacctgaactctacaaatctagggtgttggagctgaat
gcaagtgacgatcgtgggatcaatgttgttcgcacaaagatcaaagattttgctgctgtt
gctgtagggtctggccagcgcgcggggggttatccttgcccaccgttcaagataattatt
cttgatgaagcagattcaatgactgaagatgctcagaatgctttgagacgtaccatggaa
acttactcaaaagttacacgattctttttcatatgcaactacataagcaggatcatagag
ccacttgcttcaagatgtgcgaagttcagattcaagccactttcagaagaaatcatgagc
agtcgtatattgcacatttgtgatcaagaaggcctcaatttagattcagaggcactttca
acattaagttccatttcacaaggtgatcttcgtcgggctattacatacttgcagggagct
gcacgcttatttggatcatcgatttcttccaacaacctaattagtgtgtctggggttata
cctcgagaagttgtggaggcgctttatgctgcgtgcaaaagtggtaactttgatttggca
aacaaggaggtccttaatgtaatcgcagaaggttatccagtttctcagatgatatctcag
ttatttaatgtggttgttgaggcagatgatgtaccagatgaacagaaagctagaatttgc
aagagtttggctgaagcagataagcgccttgttgatggtgcggatgagtacttgcagctg
ctggatgtggccagccacacaatgcgagctttgcatgacatgccacaagaattctctttt
gaaacttag

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