Hibiscus syriacus (Rose-of-Sharon): 120182309
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Entry
120182309 CDS
T09559
Name
(RefSeq) RNA polymerase sigma factor sigC-like isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsyr03021
]
120182309
Transcription machinery [BR:
hsyr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
120182309
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
120182309
NCBI-ProteinID:
XP_039043230
LinkDB
All DBs
Position
Unknown
AA seq
586 aa
AA seq
DB search
MGLRLNLKGVFPVPSHFLANSPSKLPSSSVRGTEASFNSARVSFPSVTSDEGVILSKDPL
KAYSSSVALQTIENGCLEVEEVKIDKGSRSQSCSHVMIGKSNESIGGNKSSFCTDPQICN
TLHYGVLMENLNILEEMLVDSDMLRLEKEILLQLGRLGALNLFNTCLSRTHRPLNMFDLS
DVAAVRGVCDMNGLVDSEKDKRIVCSRKNKQHKKRREKAAETTTIFTQALSSNTLRRHFQ
KPKVSSRKRMSDTRKKLSTIARNEVEMSKGVKVVLKVGLWNAYSFVTGILRQPLTGLCFP
KQVVANLERIKTTMEEETGRAVSLSCWAEAATLTEKVLLHNLHYGWYCRDELLRSTRSLV
LYFARNYRGLGIAHEDLIQAGSIGVLQGAERFDYTTGYKFATYIQYWIRKSISRMVARHA
RGIQVPCTLSRAIGQIQKARKALSKSHGKYPEEDEIAKMTGLSLSKIRSADKCFRVVGSI
DQKIGDSINAKYLEFIPDMSIRNPEKTVMRQHMKEDLHDLLNGLEKRERQVMVLRYGLKG
SPPKSLEEIGRLFHVSKEWIRRIEIKAMTKLREKETCINLSHYLDL
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgaggctgaatctcaaaggtgttttcccagttccctctcatttcctcgccaat
tcaccttctaagctcccttcttcttctgtaagagggacggaagcttcttttaactcagct
agggtgtctttcccctctgtaacatctgatgaaggtgtgattttatcgaaagatcctctg
aaagcatactcttcatccgtagctctgcaaacaatagaaaatggttgcttagaagttgaa
gaggtaaagattgacaagggatcacggtcacagagttgttcacatgttatgatcggtaaa
tctaatgagtcaataggagggaacaaatcttccttctgcacggacccgcaaatatgcaat
acattacattatggtgtgctgatggaaaatctcaacattttagaggagatgcttgttgat
tcagatatgttgagattggagaaggaaattctacttcaattaggaaggcttggagctcta
aatttattcaatacctgtctgtctaggactcatagacctctgaacatgttcgacctatct
gatgttgctgctgttaggggagtgtgtgatatgaatggcttggtggatagtgaaaaggat
aaaagaattgtttgttctagaaaaaataaacaacacaaaaagagaagagaaaaagcagct
gaaaccactacaatttttacacaagcactgtcttccaacaccctacgccgacactttcag
aagcccaaagtgtcttctcggaaaagaatgtcagacactaggaagaaattatcgacaatt
gctagaaatgaagtagaaatgtcaaagggagttaaggttgttttgaaagttggtttatgg
aatgcatattcttttgtcacaggtattttaaggcaacctttgaccggtctatgctttccc
aagcaggtggttgcaaacttggagaggattaaaacaactatggaagaggaaactgggaga
gctgtgagcttgagttgctgggctgaagcggccacacttacagagaaggtgctgctacat
aatttgcattatggttggtactgcagggacgagctactaaggagtacacgctccttagtc
ctctactttgcaaggaactataggggtctgggaatagcccatgaagatttaatccaggcg
ggaagtataggagtcctacaaggtgcagaaaggtttgactacacaacgggatacaaattt
gctacctatatacagtactggataaggaaatcaatttcgaggatggtggcacggcatgct
agagggatccaagttccctgcacgttaagcagggcaataggacagatacagaaagctcgg
aaagcacttagcaaaagccacgggaaatacccagaagaggatgaaatagccaagatgacg
ggtctttctttgtctaaaatcaggtcggctgataaatgctttagagttgttggttcgatt
gaccagaaaatcggagattctatcaatgcaaaatatttggaatttatcccagatatgtca
atacggaacccagaaaaaactgtgatgaggcagcacatgaaggaagatcttcatgatctt
ttgaatggtctggagaaaagagagaggcaagtgatggttctacgttacgggctcaagggc
tctcccccgaagtcactcgaggagattggaaggctttttcatgtgagcaaagagtggata
agaaggatagagataaaagcaatgacaaagctgagggaaaaagaaacctgcataaattta
agccattatttggatttatag
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