Hibiscus syriacus (Rose-of-Sharon): 120182352
Help
Entry
120182352 CDS
T09559
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120182352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120182352
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120182352
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120182352
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
120182352
NCBI-ProteinID:
XP_039043272
LinkDB
All DBs
Position
Unknown
AA seq
274 aa
AA seq
DB search
MSASPKDDSIHIREVWNDNLEEEFALIREIIDTHNYVAMDTEFPGVVLRPVGTFKNINDY
NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSLCIWQFNFREFKLNEDIFAIDSIEL
LHQCGIDFKKNNEKGIDVRRFGELLMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCRSLP
DTQAGFLDLINIYFPMVYDIKHMMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTS
CTFRKLRENFFNGSTEKYAGVLYGIGVESGQSTN
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcttcgcccaaagatgattcaattcacatccgagaagtttggaacgataaccta
gaggaagagtttgctttgatccgtgaaattattgatacgcacaattatgtggctatggat
accgagttcccgggtgtagttctacgccctgttggaactttcaagaacattaatgattat
aactaccagactttgaaagataacgtggatatgctgaaattgatccaattgggtctgacc
ttttcagacgagaatgggaaccttcccacttgtggaaccgacagtttgtgcatttggcaa
ttcaatttccgagaatttaaattaaacgaagatatctttgctattgattcgatcgagttg
ttgcaccagtgtgggattgattttaagaagaataatgagaagggtattgatgtgaggcgg
ttcggtgagcttttgatgtcgtctgggatcgtgctgaatgatggtgtgcattgggttacc
tttcatagtggatatgacttcggatacttgcttaagcttctgacctgcaggagtttgccc
gatactcaagcggggtttcttgatctgatcaatatatattttcccatggtgtacgatatc
aagcatatgatgaagttttgtaatagccttcatggtggtttgaacaagctcgcagagttg
ttagaagtggaaagagttggtgtgtgtcatcaagctgggtcggatagtttgctcacgtca
tgcacatttaggaagttgagagagaacttcttcaatggctcgacagagaaatatgcaggt
gtactgtatggcataggagtagagagtggacagagtactaattag
DBGET
integrated database retrieval system
