Hibiscus syriacus (Rose-of-Sharon): 120183912
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Entry
120183912 CDS
T09559
Name
(RefSeq) polyadenylate-binding protein 7-like
KO
K13126
polyadenylate-binding protein
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03015
mRNA surveillance pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120183912
09123 Folding, sorting and degradation
03018 RNA degradation
120183912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120183912
03041 Spliceosome [BR:
hsyr03041
]
120183912
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120183912
mRNA cycle factors
Stress granule specific factors
120183912
Spliceosome [BR:
hsyr03041
]
Complex C
Other components
Complex C specific factors
120183912
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_RdRP1_2
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
120183912
NCBI-ProteinID:
XP_039044432
LinkDB
All DBs
Position
Unknown
AA seq
637 aa
AA seq
DB search
MAVTLPASMVSLYVGDLHPDTTDGTLFDSFNAFKGISSVRVCRDSSTGRSLCYGYVNFSS
LEDAHYAMEKMNHSLIHGKMIRVAWCLRDPDTRKSGVGNVFVKNLSESIDSVGLQELFQR
FGNVISCKVATLEDGKSKGYGFVQFESEESATAAIEKLDNTMIGDKQVFVGKFMKKCDRV
LPSPDVKYTNLYVKNLDPDVTEEIMQEKFSEFGKIVSLAVARDKNGASRGFGFVNFECPD
DAKRAMESMNGSQLGSKVLYVARAQKKAEREQILRTRFEELRKEQIMKYKASNVYVKNID
DNVTDDELRDLFSPCGTITSVKLMRDDKGISKGFGFVCFSAPEEATKAVDMFHGYIFQRK
PLYVAIAQRKEDRQAQLQLQHAQRMTRLAGPSTAILPGVYPQLYYTSPTGIVSQVTPRPG
MMMYQPLSFWPGWRGNGFALPGRPVFQPSLPMFPTAPRQIGANRVWMNGPALLHGGSHPF
TYAPQPQEQLMQTVNSSEDQSNQQWTGQAKYVPNGRARELNKGSDAAPGGSNSVSALTQG
SEMLSSMLSAASPEQQKAILGERLYPLVLKRQPDLVQKITGMLLEMDNSELLLLLESPES
LAARVEEAMEVIKLSNAKMSGQDARLPNFLSTGVAVN
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgacgttaccggcgtcgatggtttcgttgtacgtcggggatttgcatcccgat
accaccgacgggacgctcttcgattctttcaatgcgttcaaaggaatttcatctgtccgt
gtttgtagagattcatcaacgggaagatctctttgttacggctatgttaacttcagttct
cttgaggatgcacactatgcaatggagaagatgaatcacagtttgattcatgggaaaatg
ataagggtggcatggtgtcttcgagatcctgatacacgaaagagtggagttggaaacgtg
tttgtcaagaatctaagtgaatcaattgatagtgtggggttgcaagagttgtttcagagg
tttggaaatgtaatatcctgcaaagttgcaactttggaggatgggaaaagcaaaggttat
ggatttgttcaatttgaatctgaagaatctgcaactgctgcaatcgagaagcttgataac
accatgattggtgacaagcaagtatttgttgggaaattcatgaaaaagtgtgacagggtt
ttgccaagtcctgatgttaaatatacaaatctgtatgtgaagaacttggatccagatgtc
actgaagagattatgcaggagaaattttctgagtttgggaaaattgtctccctggctgta
gcaagggataaaaatggtgcctcgagaggtttcggctttgtgaacttcgaatgtcctgat
gatgccaagcgggcaatggagtcgatgaatggatcacaacttggttctaaggttctatat
gtagcaagggcacaaaagaaagcggaacgcgagcaaatattgcgtactcggttcgaggaa
ctacggaaggagcagatcatgaaatataaagcttcaaatgtttatgtgaagaacattgat
gacaatgttaccgacgatgagctgagagacctttttagtccatgcggtacaattacttct
gtgaaacttatgcgagatgacaaaggaataagcaaggggtttggatttgtctgtttctct
gctccggaggaggccactaaagctgtcgacatgttccatggatatattttccaacggaag
ccgctgtatgttgcgattgctcaaaggaaggaggatagacaagcacaattgcaacttcag
catgcgcagcgcatgaccagattagcagggccttcaacggctattcttcccggagtatat
cctcagctttactacacttctccgaccggcattgtttcacaagtaactccgcggccaggg
atgatgatgtatcaacctttaagtttttggccaggatggaggggtaatggctttgcatta
ccaggcagaccagtctttcaaccatcactgcccatgtttcctactgctccaagacaaatc
ggggcaaaccgggtttggatgaacggtcctgctcttttgcatggtggttctcaccccttc
acatacgcgcctcaaccgcaagaacagctgatgcagacagtgaactcttcggaagatcaa
agtaaccaacagtggactgggcaagctaaatatgtaccgaacggtcgagctcgagagttg
aacaaaggctctgatgcggcaccgggtggttcgaactctgtttcagctttgacacaaggg
agtgagatgctgagtagcatgctttctgcggcttcacccgagcagcaaaaagcaatactc
ggtgaacgactttatccccttgttctcaagcgccagcctgatctggtgcaaaagataacc
ggaatgcttctagagatggacaactctgaactgcttcttctcctagaatccccagaatcg
ctggcggccagagtggaggaagccatggaggttatcaagctctcaaatgctaaaatgtcc
ggccaagatgcccgtcttcccaacttcctttctactggagttgctgtcaactga
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