Hibiscus syriacus (Rose-of-Sharon): 120184851
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Entry
120184851 CDS
T09559
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120184851
03036 Chromosome and associated proteins [BR:
hsyr03036
]
120184851
Enzymes [BR:
hsyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
120184851
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120184851
Chromosome and associated proteins [BR:
hsyr03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
120184851
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
AAA_22
UvrD-helicase
Mov-10_helical
Helicase_RecD
DEAD
PhoH
ATPase_2
AAA_16
SLFN-g3_helicase
AroM
AAA
AAA_7
IL3Ra_N
DUF928
Motif
Other DBs
NCBI-GeneID:
120184851
NCBI-ProteinID:
XP_039045152
LinkDB
All DBs
Position
Unknown
AA seq
1021 aa
AA seq
DB search
MGTTGDRSDDEYSVIGDKGGIDFIDYAVDESVCNFNPFEDGPLVISTPFPFSNGNPQYIS
VGATAFDSISIRNTTDDPVECWTKIYASSPENSFTLSLMKPPLGNSDENTSQEFIEFFDL
EDRMIQPGETLTLWLSCKAMEIGLHTTIVHFDVEGERLERVAFLLVEDKISRSLASKKPY
SRSQRKKQFSVDEYVTGSRPARAMGRGARNKLPWYDIPNDIRELVENKQTPGAIKAGLTR
ENYAAYFKHLLILEELQLEEDMRAYNMENINMRKKGKYLSLQVPGLAEKRPSLVHGDHIF
VKLTCEDDANEATRVYEGYIHRVEAEEVYLKFALEFHSNHIDENLYNVQFKYNRINMRRQ
YHAIDATKSLDVGLLFPSESPESRVIETTPLVPICCTLNEEQMCSIEMILGCKGGPPYVI
FGPPGTGKTMTIVEAILQLYQTQKSSRILVCAPSNSAADFILEKLLNEESVELKENEIFR
LNAATRPYDDVKQNFLRFCFFDELIFKCPPLRALARYRIVISTYMSSSLLYAESVSKGHF
THIFLDESGQASEPENMIPLAHLCQKETIVVLAGDPMQLGPVIYSREADDFGLGKSYLER
LFQHECYSNGDENYVTKLVRNYRCHPEILYLPSLLFYNGELIPCKDDTGSLLNSVKFLPN
KEYPVFFFGIQGCDEREGSNPSWFNRIEASKAVQIVSSLIATGILSQEDIGIITPYRQQV
LKLQKAFESLDTPDIKVGTVEQFQGQERKVIIISTVRSTIKHNEFDRIHCLGFLSNPRRF
NVAITRAIALLVIIGNPHIIAKDPYWSQLIWRCVDNNSYQGCALPEKQEVYVDEVPASEE
CQIVMKAALLKDGVNTQRKPKMSKLGQMKPTGPTGGNVTHEGSFTSIFLPFFHRGAFALL
LLFHSDKCDELKCFTSSDTIWPNGKANGKDDIFIHYHFADYKVLSRKIIIPRRNQLLCFQ
TRFVAEVNIACSTEELGGVGNLTTGSGGKSAKSDKSDESDGFDVPGSVVLGNGGNDGQPI
A
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgggaacgactggtgacagatccgatgacgaatattccgttattggtgataaaggagga
atcgatttcatcgactatgcagtcgatgaatctgtttgtaatttcaatccgtttgaggat
ggtcctcttgtaatctctacaccattcccgttttcaaatgggaatcctcaatatatatct
gttggagcaactgctttcgattccattagtatcaggaacaccactgatgatccggtggaa
tgctggacaaaaatctatgcatcaagtccggagaactctttcactctttctttgatgaaa
cctccattggggaactctgacgaaaatacaagccaagagttcattgagttcttcgattta
gaggatcgaatgatacagcccggagagactttaaccctttggttgtcctgcaaagcaatg
gaaatcggcttgcatactacgatagtgcattttgatgttgagggtgaaagattggaaaga
gtggcctttctcttggttgaagacaagatctcgcgttctttggcatctaaaaagccatac
tctagaagtcaaagaaagaaacaattttcagtcgatgaatatgttactgggtcacgcccg
gcaagggcaatgggtcgaggtgctcgaaacaagcttccctggtatgacattccaaatgat
atcagagaactggttgagaataagcagactcctggtgccataaaagccggccttacaaga
gagaattatgcagcttacttcaaacatctcttaatcctggaagagttacaactagaggag
gacatgagggcctataacatggagaacatcaacatgaggaagaaagggaagtacttatca
cttcaggtcccggggcttgcagaaaaaaggccctcacttgttcatggagatcatatattc
gttaaactcacgtgtgaagatgatgctaatgaagcaactcgagtttatgagggttatatc
catagggtagaagctgaggaagtgtacttgaagtttgcactagaatttcactcaaaccac
atagatgaaaatctttataatgtgcagttcaagtataaccgaatcaatatgcggaggcag
taccatgccatcgatgctacaaaaagcctagatgtaggtctcctttttccatctgagtca
cccgaaagtagggttatcgaaaccactccactagtgcccatctgttgtacacttaatgag
gagcagatgtgttcaattgagatgatcctcggctgcaaaggaggaccaccttatgtgatt
ttcgggccaccaggtacagggaaaaccatgacaatagtggaggcaatcctccagctctat
caaacccaaaagtcttctcgaattctcgtgtgcgcaccttcaaatagtgcggctgatttc
attctagagaaactcctcaatgaggaatctgttgagcttaaagagaatgaaatattcaga
ctaaacgcagctacgcggccatatgatgatgtcaaacagaattttcttaggttttgcttc
tttgacgagcttatcttcaaatgtcctccgcttagagctctcgcccgctacagaatcgtg
atatcaacttacatgagttcctccctcctgtatgcagaaagtgttagtaaaggtcatttt
actcatattttcttggatgaatcaggtcaagcttcagaaccggaaaacatgatcccttta
gcgcacctttgccaaaaagagactattgttgtgcttgctggggacccaatgcagttaggt
ccggtcatatactcccgagaagctgatgattttggactggggaagtcatatttagaaagg
ctgttccaacatgagtgttactctaatggggatgaaaactatgtgacaaaattggttaga
aattacagatgtcaccccgagatcctgtatctcccttcattgcttttctacaacggtgaa
ttaatcccttgcaaagatgacacaggttcgttactgaattcagtaaagtttcttcctaac
aaggagtaccctgtctttttctttggtatacaaggctgtgacgagagggaaggaagtaat
ccgtcatggttcaatcggattgaagctagcaaggctgtacaaattgttagtagtttgata
gcaaccgggattctcagccaggaagatattgggattataaccccctacaggcagcaagtc
ctcaaactacagaaggcctttgagagccttgacacaccagatatcaaggttggcactgtt
gaacaattccaaggccaagaacggaaagttatcatcatatctaccgtccgatcaacaatc
aaacacaatgagtttgacagaatccattgtctggggtttttgagcaatcctagaaggttt
aatgtggccattacccgtgccatagctttgcttgttattattggaaatccacacataatt
gccaaggacccatactggagccagcttatatggcgttgtgtcgataacaactcttaccag
ggctgtgctctgcccgaaaagcaagaagtgtacgtcgatgaagttccagcatcggaggaa
tgtcagattgtgatgaaagcagcattgctgaaagatggggtgaatacacagcggaaaccg
aaaatgtcaaaacttggacagatgaagccgactggaccgacgggtggaaatgtgacacat
gaggggtctttcacttctatttttctgccattctttcataggggggcctttgctttgctg
cttttgtttcacagtgataaatgtgatgaactcaagtgtttcacttcaagtgacacaata
tggcctaatggtaaagcaaatgggaaagacgacatcttcatacactatcattttgctgat
tacaaagtattaagcaggaaaatcatcattccaagaaggaaccaacttctttgcttccaa
acccggtttgttgcagaagtaaacatagcttgttctaccgaggaactcggtggtgttggc
aacctgaccacaggttccggaggcaagtccgccaaatctgacaaatccgatgaatcggat
ggtttcgatgtccctggatcggtggtgcttggaaatggcggcaacgatggtcaacccatc
gcatga
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integrated database retrieval system
