Hibiscus syriacus (Rose-of-Sharon): 120185537
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Entry
120185537 CDS
T09559
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120185537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120185537
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
120185537
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
120185537
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
ATPgrasp_YheCD
Motif
Other DBs
NCBI-GeneID:
120185537
NCBI-ProteinID:
XP_039045654
LinkDB
All DBs
Position
Unknown
AA seq
321 aa
AA seq
DB search
MRGLQLPLSQTQRTRLQRAFEKLQSLSSKANSDASVTVADTIPVNYEDAFLKGHGTTELN
GELVATVCGVVERINKLVYVRGLRARYKPEVGDIVVGRVVEVAQKRWRLEINFSQDAILM
LSSMNMPDGIQRRRTALDELNMRSIFEENDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG
QLLIIDPYLVKKSKSHFHHLEQFGIDLILGRNGFIWVGEHVETRDSMVVDKPNSSEQSMV
LEERNQTHTPLEMRQNICRVANAVRVLSTLGFSMDADLIMETVELSSSLKIDIHDMLGSE
FHVLVAEREAERRSLMGKRRR
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgagaggattacagctgccgttgagccaaacgcaacgaacacgacttcaaagagcattc
gaaaagcttcagtctctctcttcgaaggccaattcagacgcttcggttaccgtcgccgat
acgattcccgtcaactacgaagacgcttttctcaaggggcatggaacaacggaactcaat
ggcgaattggtggcaactgtgtgtggcgtggtggagcgcatcaacaaactggtctatgtt
cgcggcttacgcgctaggtacaagccagaggttggggatattgtagtgggacgtgtagtt
gaggttgctcaaaagaggtggagattggaaatcaatttcagccaagatgccattttaatg
ctttcctcgatgaacatgcctgatggtattcagaggcggcgaactgctttggatgaacta
aacatgcgtagtatctttgaagagaatgatgttgtctgtgctgaggttcgtaatttccag
catgatggcagcttacaactccaagcaagaagtcaaaagtatggaaagcttgagaagggc
caattgctcataattgatccttacctagtgaagaaaagcaaatcacatttccatcacctt
gaacaatttggaattgacttgatactcgggcgcaatggattcatttgggttggtgaacat
gtcgaaaccagagacagtatggtagtggataaacctaatagttctgaacaatccatggtt
cttgaagaaagaaaccaaactcatacccctctagagatgaggcagaacatatgcagagtt
gcaaacgctgtccgcgtattgtctactttaggcttcagtatggatgcagatttgatcatg
gagaccgttgagttgagcagctcactgaaaatcgatatacatgacatgctaggatcagag
tttcatgttctggttgctgaaagggaagccgagcggagaagcttgatgggaaagcggaga
agatga
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