Hibiscus syriacus (Rose-of-Sharon): 120186242
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Entry
120186242 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MSH6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120186242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120186242
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120186242
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
120186242
NCBI-ProteinID:
XP_039046163
LinkDB
All DBs
Position
Unknown
AA seq
1260 aa
AA seq
DB search
MAPPRRQSNGRSPIVNQQSQITSFFTRKNSTSLSHSPTPPHLAKQTSKLNPNPKRNRSPS
TSPSPTTPSPFESRLKKPLLVIGQSPAPSPSSLSNKTFGNEVIEKRLRVHWPLDKEWYEG
VVKSFDKNTGKHLILYDDDEEEELDLGKEKIEWVEETVGRFKRLRRGGSLVFKKVVIEDK
DEDVAENLNEKSDDNDDDSSDEDWXGKLESGKKSKTSANASSKEEFKVWLSEPVKKIEIE
KASSDFDKVLVADGLERFGKREAEKLHFFGPKVRRDANRKRPGDVNYNPKTLFLPPDFLR
SLSCGQRQWWEFKSKHMDKVLFFKMGKFYELFEMDAHIGAKELNLQYMKGEQPHCGFPER
NFSMNVENLARKGYRVLVVEQTETPEQLELRRKEKGAKDKVVKREICSVVTKGTLTEGEM
LSANPDPSYLLAVTESCQGSTNQSERVFGVCAVDVATSRIIIGQFEDDSECSALCCLLAE
LRPVEIIKPTNLLSLETERAMLRHFRTPLVNDLVPSAEFWDADKTIHEVKTIYKCVNDQR
AARSINDVGADASNSTKDDELSCLPAVLCSLLSAGANGSLALSALGGTLYYLKQAFLDVT
LLRFAKFESLPSSGFSGVAQKPYMLLDAAALENLEIFENSLNGDSSRTLYAQLNHCVTAF
GKRLLRTWLARPLYHTHLIKERQDAVAGLKGENLSHALEFRKALSRLPDMERLLARIFAS
SEANGRNANKVVLYEDAAKKLLQEFVSALRGCELMVQACSSLGFVLEDVESTLLHHLLTT
GKGLPNIHYILKHFKDAFDWVDANNSGRIIPHKGVDLEYDSACERVEEIESSLAKHLKEL
RKLLGDSSITYVTVGKDAYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPCIKKFLGELS
LAKSEKETALKNILQRLIVQFCEDHNKWRQLVSTTAELDVLFSLAIASDFYEGPTCRPRI
LGSSCSNEVPCLSAKGLGHPILTSDFIGKGSFVPNDITIGGTGHASFILLTGPNMGGKST
LLRQVCLATILAQVGADVPAEHFELSPVDKIFVRMGAKDHIMAGQSTFLTELSETALMLS
SATPHSLVALDELGRGTSTSDGQAIAESVLEHFVHKVQCRGMFSTHYHRLAVDYQNNSKV
SLCHMACQIGNGVEGVEEVTFLYRLTSGACPKSYGVNVARIAGLPDSVLRTAASKSREFE
TVYGKHRRKGMEDNLPMQRCPDKIVVALIRELIGLSTSEGTCISSLIELQQRVRMVLHQQ
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgccgcgtcggcagagcaatggcagatctccgatcgttaatcaacagagccaa
atcacttccttcttcactagaaagaactctacttccctctctcattctccgactccccct
catcttgccaagcagacctctaaactcaaccctaaccctaaacgtaaccgcagtccaagt
acaagtcccagccctacaactccgtctcctttcgaatccaggcttaaaaagcctctccta
gtcattggacaatcacctgccccgagtccttcgtcgctgagcaacaaaacgtttggcaat
gaagtgatcgagaagaggctaagggttcactggccgttggataaggaatggtacgagggc
gtagtgaagtcttttgataagaacacaggaaagcatttgattctgtacgatgatgatgag
gaagaggagctggatttggggaaggagaagattgagtgggttgaagaaaccgtaggcagg
tttaagcggttgcggcgtgggggttctttggtttttaagaaagtggtgattgaagataag
gacgaggatgtggcggagaatttgaacgaaaagagtgacgataatgatgacgattctagt
gatgaagattggngagggaaattggaatctggtaagaagagtaagaccagtgcaaatgct
agtagtaaggaagagtttaaggtatggttgtctgaaccagtgaagaaaattgaaattgag
aaggcatctagtgattttgacaaggttttggtagctgatggattagaaaggtttgggaag
cgcgaagctgagaagttgcacttctttggaccaaaggtgcgtagagatgcgaataggaag
cgtcctggagatgtaaactacaatccaaaaactttattcttgcctcctgatttcttgagg
agcctatcatgcggccaaaggcaatggtgggaatttaagtcaaaacatatggacaaagtt
ctatttttcaagatgggtaaattttatgagctttttgaaatggatgcacatataggggca
aaagaactgaatttgcaatacatgaagggggaacaacctcactgtggatttcctgagagg
aacttctctatgaatgtggagaacttagctcggaagggttatcgagtgcttgtagtagag
caaacagaaactcctgaacagctggagcttcgtcggaaagagaaaggtgccaaggataag
gttgtcaagcgtgaaatatgttctgtggttactaaaggaaccctaactgaaggtgaaatg
ctgtcggcaaatcctgacccttcttacctcttggcagtgaccgaaagttgtcaaggttca
acaaaccaaagtgagagggtttttggtgtatgtgccgttgatgttgcaaccagcaggatt
attattggacagtttgaggatgattctgagtgcagtgctttgtgttgtctattggctgag
ctaagaccagtagaaattataaaacccactaacctgctcagccttgaaactgagagggct
atgctgagacattttagaactcccttagtgaatgacttggtcccatctgcagaattttgg
gatgcagacaaaactattcatgaagtcaaaaccatctacaagtgtgttaatgatcaacga
gctgctagatctattaatgatgtgggcgcagatgcttctaattctaccaaggatgatgag
ttgagctgcctgccagctgtcctttgcagtctactgagtgctggtgcaaatggcagccta
gcgctctcagctcttggaggcactctttattacctgaaacaggcctttctagatgtgaca
ttgcttagatttgctaaatttgaatcacttccatcctctggattcagtggtgttgctcaa
aagccttacatgcttcttgatgctgctgcccttgagaaccttgagatctttgaaaacagc
ctaaatggagattcttctaggacactctatgctcaattgaatcactgtgtaactgcattt
gggaagaggttgctaagaacatggcttgctagaccgttatatcatactcatttaattaag
gagcggcaagatgctgtagcaggcctaaagggggaaaatctatcacatgcccttgagttt
cgaaaggcattgtccaggcttcccgacatggagaggctacttgcacgtatctttgctagc
agtgaggctaatggaagaaatgcaaataaagttgttttatatgaagatgcagcaaagaag
ctactccaggaattcgtatcagcgctgcgtggctgtgaactaatggtccaagcatgttct
tcccttggttttgttctggaagatgtggaatctacactgcttcatcatttgttaaccact
ggtaaaggtcttccaaatatccattatattctaaagcatttcaaagatgcctttgattgg
gttgatgccaacaattctggacgtataatacctcataaaggagttgatctggaatatgac
tcggcatgtgaaagagttgaggagattgaatctagtttggcaaaacacctcaaggaactg
cggaagttacttggagattcatccatcacctatgtcacagttggaaaagatgcatatcta
ttggaagtgccagaaagcctgcgtgggagtgtacctcgagattatgagttacgttcatcc
aaaaagggctttttccgttattggactccatgtatcaaaaagttcctgggagaactctcg
ctagctaaatctgaaaaggagacagctttaaagaacattctccagaggttaattgtacaa
ttctgcgaagatcacaataaatggaggcaactagtttcaacaacagcggaactggatgta
ctgttcagtctagcaattgcaagtgatttttatgaagggccaacctgtcgtcctcgtatc
ttgggctcttcatgttcaaatgaagtgccatgcctttctgcaaaaggtttaggacatcct
attcttacaagtgattttataggcaaaggttcatttgtccccaatgacatcactattggt
ggtactggtcatgcaagttttatccttcttaccggtcctaatatgggtggaaagtcgact
cttcttcgccaagtttgcttggcgacgattttggcccaagtcggagctgatgtccctgca
gaacattttgaactatctcctgttgacaaaatctttgttcggatgggtgccaaagatcat
attatggcaggacagagtacatttttaactgagctttcagaaactgcattaatgctgtcc
tcagcaactccacattcacttgtggcattagatgaacttggacgtggaacatcaacttct
gatggacaagccattgcggaatcagttcttgaacattttgtacacaaggtgcagtgtcga
ggaatgttttcaacacactaccaccgtttagctgtggactaccaaaacaattccaaggtc
tctctctgccatatggcatgccaaataggaaatggagttgaaggtgttgaagaagttaca
tttctttacaggttgacctctggtgcctgtccaaaaagttatggtgtaaatgttgctcgg
atagctgggcttcctgactcggtgctaagaacagctgcgagtaagtctagagaattcgag
actgtatacgggaaacacagaagaaagggaatggaagacaacttgccgatgcaaagatgc
ccggataagatagtggtagctttgattcgagaattgataggcctaagcacaagtgagggc
acatgtattagttccttgattgaacttcaacagagggtaaggatggttctgcatcaacaa
tga
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