Hibiscus syriacus (Rose-of-Sharon): 120186355
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Entry
120186355 CDS
T09559
Name
(RefSeq) pre-mRNA-processing factor 39-like
KO
K13217
pre-mRNA-processing factor 39
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsyr03041
]
120186355
Spliceosome [BR:
hsyr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120186355
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
UTP6_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
120186355
NCBI-ProteinID:
XP_039046240
LinkDB
All DBs
Position
Unknown
AA seq
744 aa
AA seq
DB search
MGDSEAVAADSSTMMDYTSAAYNSNGSGAYSSEATADPTASGGDPNSACQEGQISAMYDS
KPAGGSTDENALAVENTAADASKAAGSNYPLNGNVVSEAGNATTFENGNVFDNVGGVSSA
PEFVDGSAPTLSGEEEHMWSIVRANSLDFNAWTTLIEETEKLAGNNIMKIRKVYDAFLAE
FPLCYGYWKKYADHEAHIGSMDKVVEVYERAVQGVTYSVDIWVLYCAFSIETYGDPETIR
RLFERGLTYVGTDYLSFPLWDKYIEYEYMHQEWSRLSSIYTRILENPNQQLDRYFNSFKE
LAGSRPLSELRTTEEAAANVSGAVLEVDGHVNEAEVHPDVAEQTPKPVTAGSTEAEELEK
YVAIREELYQKSKELDSKIIGFETAIRRPYFHVRPLNVAELENWHNYLDFIEREGDLNKV
VKLYERCLIACANYPEYWIRYVLCMEASGSMDLANNALLRATQVFVKRQPEIHLFAARFK
EQNGDIEGAQAAYQLVHSEISPGLLEAIIKHANMEHRLWKLEDAFSLYEQAIAIEKGKEH
SQTLLMLYAQYSRFSYLVCGNAKKAREILAGALDHVQLSKPFLEALIHFEAILPPPRQID
YLELLVDKFIAPNSNGSGADKEDLSSIFLEFLNLFGDVQSIKKAEDRHAKLFLPHRLMSE
LRKRHAEDFLSSDKTKLAKAYSGAPSPGQSLMGNYPNAQNQWPGGYGSQPQTWPPTTQAP
TQAQPQAQPWNSGYNQQVDCTYIF
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgggagatagtgaagcagtagctgcagactcatcaacaatgatggattatacttcggca
gcttataattctaatggttctggtgcttactcctctgaggctacagcagatcccactgct
tctggtggtgacccaaattctgcttgtcaagaaggtcaaatcagtgcaatgtatgacagc
aagcccgctggtggatcaacagatgagaatgctcttgcagttgaaaatactgcagcagat
gcatcaaaagctgctggttctaattatcctttaaatgggaatgttgttagtgaagcagga
aatgcaactacatttgagaatggaaatgtttttgataatgtaggtggagtttcatctgca
cctgagtttgtggatggatctgcaccaactctgtctggtgaagaggaacacatgtggagt
attgtgagagctaattcgttggattttaatgcttggactacattgatcgaggaaacagag
aagcttgcagggaacaatataatgaaaattcgaaaggtttatgatgctttcttggccgag
tttcctttgtgctatggttactggaaaaagtatgcggatcatgaagcacacataggctcc
atggacaaagttgtagaagtctatgaaagggcagttcagggagtgacatattccgtggat
atttgggtactatattgtgctttttccattgaaacatatggagatccagaaaccatccga
aggctctttgaacgaggattaacgtatgttggaactgattatctgtctttccctctttgg
gataaatacattgaatatgagtacatgcaccaggagtggagtcgcctttcttcaatttat
actagaatattagagaaccctaatcaacaactagataggtattttaacagttttaaagag
ttggctggaagtcgacctttgtcagaattaagaacaaccgaggaagctgctgccaatgta
tcaggtgcagttttagaggtcgatggacacgtcaatgaagcagaggttcatcctgatgtt
gcagagcaaactccaaaacctgtaactgctggctcaactgaagcagaagagttggagaag
tatgttgccattagagaagagctatatcaaaaatccaaagagctcgattctaagatcatt
ggttttgaaacggctattagaaggccttactttcatgttcggcccctcaatgttgctgag
cttgaaaactggcataactacctggactttatagaaagagagggtgacttaaataaggta
gtcaaattatatgaaaggtgccttatagcatgtgccaattatcccgagtactggatacga
tatgttttatgtatggaagccagtggaagcatggatcttgctaacaatgcccttttgcgt
gctacacaagtttttgtcaagaggcaaccagagatccatctttttgcggctcggttcaag
gaacagaatggggacatagaaggtgctcaagctgcatatcaacttgttcacagtgaaata
tcacctggtctgcttgaagcaattattaagcatgcaaatatggaacatcgtctgtggaaa
ttggaagatgccttctctttatatgagcaagctattgccattgaaaaaggaaaagagcat
tctcaaacattactgatgctgtatgcacaatattctagattttcatacttggtttgcgga
aatgcgaagaaggctagggaaattttagctggagcacttgatcatgtccaactgtctaaa
ccgttccttgaggccttaatacattttgaagcaattttgccaccaccaaggcagattgat
tatttagagttattagttgacaagtttatagccccaaactcaaatggcagtggtgcagac
aaggaagatctatctagcatatttttggagttcttgaatctctttggcgatgtacaatct
attaaaaaggcggaggatcggcatgctaaactctttttacctcataggctcatgtcggaa
ttaagaaaacgtcatgcagaagattttttatcttcagataagacaaagcttgcgaaagct
tactcaggtgccccctcacctggccagtctctgatgggtaactatccaaatgcacaaaac
cagtggccaggtggttatggttcacagcctcaaacttggccacccactacacaggctcct
acacaggcacaacctcaggcacaaccttggaattctggctacaaccaacaggtagattgc
acttatatcttttaa
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