Hibiscus syriacus (Rose-of-Sharon): 120186672
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Entry
120186672 CDS
T09559
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MSH3-like
KO
K08736
DNA mismatch repair protein MSH3
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120186672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsyr03400
]
120186672
DNA repair and recombination proteins [BR:
hsyr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120186672
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
DUF4944
Motif
Other DBs
NCBI-GeneID:
120186672
NCBI-ProteinID:
XP_039046481
LinkDB
All DBs
Position
Unknown
AA seq
1103 aa
AA seq
DB search
MGKQKQQVISRFFAPKPRIPPSNPSSSSPPPPPAPRIRSPNVKTTVSFSPSKRKLLSDHL
PSTPKRPKTTLSPHTLNPVPPQSNPSLHQKFLQKLLEPSSPPLPERSIEPSESDHKSYTP
LEQQVVDLKNKYPDVLLMVKVGYRFRFFGKDAEIAAKVLGIYAHVDRNFLTASVPTFRLN
VHVRRLVTAGYKVGVVKQTETAAIKAHSSNRVGPFGRGLSALYTKATLEAAEDVGGKEEG
CGAESNYLVCVVEKGLDLSGSVSNLGGAHVRIGIVGVEISTGDVVYGEFDDGVMRSELEA
VVLSLAPAELLLGQALSKQTEKLLLAYAGPASNVRLEHVTCDCFKDGGAREDLISVYEKM
VEDNLADNVHQLAEATEQGNSHSLIQGVMDMPDLALQALALTIQHLKQFGFERILCFGAS
FRSLSSRIEMNLSANALQQLEILRNNSDGSESGSLLGIMNHTLTTYGSRLLRHWITHPLC
DRNMISARLDAVSEIALSMGSYKDSQSIVEIKGEDSDLTTMQTELSCLLSSVLTFLGRSP
DIQRGITRIFHRTATPTEFIAVIQAILSAGKQLKRLHIDEEYEDHGCKKVGVATVQSTLL
KRLILTASSSKVLGIAVKLLSTLNKEAADKGDFTDLIIISKDQFPEVATARRALQLAKVK
LDNMIGSYRKQFGNRNLEFTCVAGTTHLVELPIDAKVPSNWVRVNSTKKTIRYHPPEVLT
ALDQLSLANEELTIICRAAWDSFLREIGEYYVDFYAAVQALAALDCLHSLAVLSRNKNYV
RPIFVEDRKPVQIQIHAGRHPVVETILQDSFVPNDTILRADGEYCQIVTGPNMGGKSCYI
RQVALIALMAQVGSFVPAESATLPVLDAIYTRIGASDSIQQGRSTFLEELSEASQILRNC
TAKSLVIIDELGRGTSTHDGVAIAYATLHHLLDQKKCMVLFVTHYPKIADIKVKFPGSVE
AYHVSYLTSCNDESTPEAKSDHDVTYLYKLVPGVSARSFGFKVAQLAQLPSSCINKAIFM
ATRLETIESSRVGEKSGERQRQENILPSTAGFHSGRTEDPEEFVSAFGDVLLKLKSATTD
DDLEESFRLLKEARGVARELLNR
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagcaaaagcaacaagtgatttctcgcttctttgctcccaagcccagaattcca
ccgtcaaacccatcgtcgtcctctcctcctcctccgccggcgccgcggattcgatcccct
aacgtaaaaacaacggtatccttttctccttcgaaacgcaagcttctctctgaccacctc
ccttccactcctaaaagacccaaaaccacgctttccccccacacgcttaacccggttcct
cctcagtctaatccttccctccaccagaagttcctacagaaactcctcgaaccatcttca
ccacctcttccggaacgttccatcgaaccttctgaatccgaccacaaaagctacactcca
ttggaacagcaagttgtggatttgaaaaacaagtacccggatgttctcctcatggtgaaa
gttggttacaggtttcggttcttcgggaaagatgcggagatagccgcgaaagtgttggga
atttacgcccatgttgatcgcaacttcttaacagcaagtgtgccaacttttcgattgaat
gttcatgtgaggaggctggttactgccgggtacaaggttggggtggtgaaacagacagaa
acagctgcgattaaggcgcacagttccaaccgggttggcccgtttggcagagggttgtcg
gcattgtacactaaggcgacgctggaggcggcggaggatgtgggagggaaggaggaaggg
tgtggtgcagagagtaattatttagtttgtgttgtagagaaaggtttggatttatctggg
tcggtttcgaatttgggtggggctcatgtgaggattggaattgttggagtagagatttca
accggggatgtcgtgtacggtgagtttgatgacggggttatgaggagtgagcttgaagct
gtggttttgagcttggctccggccgagttattgcttggacaagcactttcaaaacaaaca
gaaaagttgctactggcatatgctggacctgcctcgaatgttcgcctggagcatgtcact
tgtgattgtttcaaggatggtggtgcacgtgaggatttgatatctgtttatgagaagatg
gttgaagataatttagcagataatgtgcatcagttagcagaggctacagaacagggaaac
tctcactctttgattcagggtgtcatggacatgccagatttggctttgcaagcattggcc
ttaactattcagcatctcaagcaatttggatttgaaagaattttgtgctttggagcttca
ttccgctccttatcaagcaggatcgagatgaacctttcagcaaatgcacttcaacaatta
gagattttgaggaataattcagacggttctgaatctggctcattgcttggaatcatgaat
catactctcactacttatggatcgaggcttttaagacactggattactcacccattatgt
gatagaaacatgatatctgctcgactggatgctgtttctgaaatcgctctgtccatgggg
tcttataaagactctcagagtatagttgagatcaagggggaagattctgacttgactact
atgcaaacagaattgtcatgtttgctttcctcagttttaactttcttaggaagatcacct
gacattcaacgtggaataacaagaatcttccatcgaactgccaccccaacagagttcatt
gcagttattcaagctattttgtctgctggaaagcaacttaagcggcttcatattgatgaa
gaatatgaggatcatggctgcaaaaaagttggagttgcaactgtgcagtctactctgttg
aaaaggttgattttgactgcttcatcatccaaggtacttggcattgctgtcaaactactt
tctaccctaaacaaagaagcagctgataaaggggattttacagacttaatcatcatatct
aaagaccaatttcctgaggttgctaccgctcggagagcacttcagttggcaaaggtcaaa
ctggataatatgattggatcatacagaaaacaatttgggaatcgcaatttggaatttaca
tgtgtggcaggaactacacatttggtagagctgcctatagatgccaaggtaccttcaaac
tgggttagggtaaacagtaccaaaaaaacaataaggtatcatccacctgaagtattgact
gctctagaccagttaagtctggcaaatgaagagctcaccattatctgtcgagctgcatgg
gacagctttcttagggaaattggagaatattatgtggacttttacgctgctgttcaagca
cttgctgctctggactgtttgcactcacttgccgttctttcaagaaataagaattatgtc
cgtcctatttttgtggaggacaggaaacctgttcaaatacaaatccacgctggccgccac
cctgtagtggagaccatcttacaagacagttttgttccgaatgacacaatattgcgtgca
gatggagagtattgtcagattgttacgggtcctaatatgggtgggaaaagttgttacatt
cgccaggttgctctaattgctttgatggctcaggttgggtcctttgtaccagcagaatca
gccactctgcccgtgttagatgccatctacacgcgcataggtgcgtctgacagtatccaa
caagggagaagtacctttctggaggaactaagtgaggcttctcagatactccggaattgc
actgcaaagtcgcttgttatcattgatgagcttggaagaggaaccagtacacatgatggt
gtagctattgcttatgctacattgcatcatctgctggatcagaaaaaatgcatggtcctc
ttcgtgacccattaccctaaaattgccgacattaaagttaaatttcctgggtctgtggag
gcataccacgtctcttatctgacctcatgtaatgacgagagtactcccgaagcaaaatct
gatcatgatgtaacttacctatataagctcgtccctggtgtttctgctcggagttttggt
ttcaaggttgcacagcttgcacagctgccttcatcatgcattaataaagcaatctttatg
gctacaagactggaaacaattgaaagcagcagagtgggagaaaaatcaggagaaaggcag
cgacaagagaacatattaccatctactgctggcttccatagtggaaggacagaggatccg
gaagaattcgttagtgctttcggggacgtgcttttgaaattgaagtctgcaacaacggat
gatgaccttgaagaaagctttcggctgttgaaagaggctagaggcgttgcaagggaatta
ttaaacaggtaa
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integrated database retrieval system
