Hibiscus syriacus (Rose-of-Sharon): 120187204
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Entry
120187204 CDS
T09559
Name
(RefSeq) uncharacterized PE-PGRS family protein PE_PGRS46-like
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03015
mRNA surveillance pathway
hsyr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120187204
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120187204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120187204
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
120187204
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
120187204
NCBI-ProteinID:
XP_039046912
LinkDB
All DBs
Position
Unknown
AA seq
713 aa
AA seq
DB search
MFEEEKMDEGKGGDRMDQFHRNEAISAVADESFLGEEDDDYEDLYNDVNVGEGFLQSLRR
NDDVGFRNEETKNSLNINSGGKVCGSPIGAPESGVSIPGVAGSGERGDSRVSYESQAFRG
GGGVDDVKGPSPGFGGGGCGLRVELAQAPSKLNEVVAEQSGNKNSGLGSAGGMGHQGYGV
GSVENEGLVRQGVVGGVGVNGPGASGSSCGGPMIGNGGANMCVVGPGVGATDGAGGSGGG
GGGTILFVGDLHWWTTDAELESELCKYGPVKEVKFFDEKASGKSKGYCQVEFYDPAAATV
CKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQLNRNQQMAQSAQARRGPNDVGAKTGANN
IQTGGNYQGADNNRGYGRGNWGRGNAQGIGGRGPGGPMRNRAGGMGGRGIMGNGGNGFGQ
GMGGAPPLMHPMGQGFDPAFGGPMGRMGAYGGFPGAPAPPFGGILPSFPPVGGVGLPGVA
PHVNPAFFGRGMPMNGMGMMPSSGANGPNMGMWSDSTMGGWGGDEHGGGRAGESSYGEEA
ASDHKYGEVSHDRGVWQNPAKEKDRAFEREWSGSSERKYHDDRKSGYDRDIPREKELGHG
HDRPERRHRDDRDIGRERDRERSRDRDRNRDRDRERDRDRDRDRDRDRDRYREDRDKYAD
HRRHRDREPEHDDDWDRGRSSRTRSKSRLSQEDEHRPRSRDADYGKRPRLTSE
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaggaggaaaagatggatgaaggaaaaggaggggatcgcatggatcagttccat
agaaacgaagcaatatcggccgttgctgatgagagttttttaggtgaagaagacgacgat
tatgaagacctttacaatgatgttaatgttggcgaagggtttcttcaatcattgagaaga
aacgatgatgtagggtttagaaatgaagaaactaagaatagtttgaatattaatagtggt
gggaaagtttgtgggtcaccaataggtgctccagaatctggtgtttcaattccaggggtt
gcaggtagtggtgaaagaggggattctagggtttcttatgagagtcaagcgtttagaggt
ggtggtggtgttgatgatgtcaaaggacctagtccaggctttggtggcggtggctgtggg
cttagggttgaattagctcaggctccgagtaagttgaatgaggtggttgcggagcagagt
gggaataagaatagtggtttaggtagtgcaggtggtatgggacatcagggatatggtgtg
gggagtgttgagaatgagggtttggtgagacaaggagtagtaggaggtgtgggtgtgaat
ggccccggtgccagcggcagtagctgtggcggtcctatgattgggaatggaggtgcaaat
atgtgtgttgttggccctggagttggagcaacggatggtgcaggtggcagtggaggtgga
ggtggtgggacaatattgtttgttggtgatttgcattggtggactacagatgctgaattg
gagtctgagttgtgtaagtatggacccgttaaggaagtaaagtttttcgatgagaaagca
agtgggaagtcaaaagggtattgccaggttgagttttatgatccagccgcagctacagtt
tgtaaggaggggatgaatgggcacgtgtttaatggaaggccttgtgttgttgcctttgca
tcgccatttactgttaagaaaatgggagaggctcagttaaataggaatcagcagatggca
cagtctgctcaagcaaggaggggtcctaatgatgtgggtgctaagactggtgccaataat
attcaaactggtgggaattatcaaggtgcggataataataggggttatgggagagggaat
tggggaagaggcaatgctcaggggatcggaggtagagggccaggtggtcctatgaggaac
agggctggtggaatgggtggcagaggtatcatgggaaatggtggaaatggatttgggcag
ggaatgggtggggcacctcctctcatgcacccgatgggtcaaggttttgatcctgctttt
ggtggaccgatgggaagaatgggagcttatggaggctttcccggagctccagcacctcct
tttggggggattttaccttcattccctccggttggaggagttggtttgcctggagtggct
cctcatgttaaccctgcattctttggaagaggtatgcccatgaatggtatggggatgatg
ccctcaagtggtgcaaatgggcctaatatgggaatgtggtcagattctaccatgggagga
tggggtggtgatgagcatggtggtgggagagctggagagtcgagttatggggaggaagct
gcatctgaccataaatatggcgaggttagtcatgacagaggtgtttggcaaaacccagcc
aaagaaaaagatagagcttttgaaagagaatggtctggttcatccgaaagaaagtaccat
gatgatagaaaatcaggatatgatagggacatacccagggagaaagaactaggccatggt
catgataggccagaaagaagacacagggatgatagagacattggtcgagaacgagatagg
gagcgctctcgagatcgtgaccgcaatcgtgatcgtgacagggaacgtgatcgagatagg
gatagagatagagatagagatagggatcgatatagggaagacagagacaaatatgctgat
catcgtaggcacagggaccgtgagcctgagcatgatgatgattgggaccgggggcggtca
tcaaggactcgcagcaagtcccgattatcacaggaagatgagcatcgcccaagatctaga
gatgctgattatgggaagaggccaaggcttacctcagagtga
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